RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	YRB2	P40517	327 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	TIR3	P40552	269 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	COS12	P53053	380 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	ERG13	P54839	491 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	YDR387C	Q04162	555 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	GET4	Q12125	312 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	CDC8	P00572	216 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	SPT3	P06844	337 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	RPL35A	P0CX84	120 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	RPL35B	P0CX85	120 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	ARO3	P14843	370 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	AMD1	P15274	810 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	UTR1	P21373	530 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	IMG1	P25626	169 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	UGP1	P32861	499 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	YBR139W	P38109	508 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	BZZ1	P38822	633 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	PFA3	P42836	336 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	HOC1	P47124	396 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	REX4	Q08237	289 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	ATG31	Q12421	196 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	ISN1	Q99312	450 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	YLR358C	O13565	187 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	ILV2	P07342	687 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	SLM5	P25345	492 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	SPT14	P32363	452 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	RMA1	P36001	430 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	KKQ8	P36004	724 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	SPC97	P38863	823 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	YHR182W	P38870	785 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	SER3	P40054	469 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	NGL2	Q03264	515 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	YPR147C	Q06522	304 aa	Known RBP	4.6	□□□□□ -1.67
NUP116	YMR047C	YDL086W	Q07505	273 aa		4.6	□□□□□ -1.67
NUP116	YMR047C	CBF1	P17106	351 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	ADE1	P27616	306 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	PET309	P32522	965 aa	Predicted RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	MKS1	P34072	584 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	DOA1	P36037	715 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	CEM1	P39525	442 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	YNL320W	P42840	284 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	TDA10	P42938	290 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	ARC1	P46672	376 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	IMO32	P53219	342 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	OSH6	Q02201	448 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	LYS21	Q12122	440 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	ATG34	Q12292	412 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	TOR2	P32600	2474 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	STE2	D6VTK4	431 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	COX1	P00401	534 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	AI4	P03878	556 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	YCK2	P23292	546 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	YCR099C	P25657	155 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	MGT1	P26188	188 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	SFC1	P33303	322 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	EGD2	P38879	174 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	VMA13	P41807	478 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	RPS12	P48589	143 aa	Known RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	SLX9	P53251	210 aa	Predicted RBP	4.59	□□□□□ -1.67
NUP116	YMR047C	YMD8	Q03697	442 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	ACL4	Q03771	387 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	HDA3	Q06623	655 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	YLR413W	Q06689	675 aa		4.59	□□□□□ -1.67
NUP116	YMR047C	MF(ALPHA)1	P01149	165 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	KIN28	P06242	306 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	GUK1	P15454	187 aa	Known RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	YCR006C	P25350	157 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	CTR86	P25355	563 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	LAS1	P36146	502 aa	Predicted RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	LCL3	P53153	274 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	SUR7	P54003	302 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	SNP1	Q00916	300 aa	Predicted RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	RSN1	Q03516	953 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	CTK1	Q03957	528 aa	Known RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	MRH1	Q12117	320 aa	Predicted RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	HAL9	Q12180	1030 aa		4.59	□□□□□ -1.68
NUP116	YMR047C	HRP1	Q99383	534 aa	Known RBP	4.59	□□□□□ -1.68
NUP116	YMR047C	TOP3	P13099	656 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	RPI1	P23250	407 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	MIR1	P23641	311 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	RPS5	P26783	225 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	GSH1	P32477	678 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	TSC10	P38342	320 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YJL206C	P39529	758 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	PRP39	P39682	629 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	RPL6A	Q02326	176 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	YDR541C	Q03049	344 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YDR248C	Q03786	193 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	ECM18	Q04623	453 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	SCP1	Q08873	200 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	AKR2	Q12013	749 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	PNO1	Q99216	274 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	HXK2	P04807	486 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	MRP1	P10662	321 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	CDC26	P14724	124 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	SED4	P25365	1065 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YMC1	P32331	307 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	MCM10	P32354	571 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	KAP122	P32767	1081 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	SRO77	P38163	1010 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms