RNA–Protein interactions for RNA: snR49

snR49, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR49, Length 165 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR49	snR49	SCEI	P03882	235 aa		0.67	□□□□□ -2.3
snR49	snR49	IMA3	P0CW40	589 aa		0.67	□□□□□ -2.3
snR49	snR49	IMA4	P0CW41	589 aa		0.67	□□□□□ -2.3
snR49	snR49	RPS23A	P0CX29	145 aa	Known RBP	0.67	□□□□□ -2.3
snR49	snR49	RPS23B	P0CX30	145 aa		0.67	□□□□□ -2.3
snR49	snR49	OCA4	P25366	362 aa		0.67	□□□□□ -2.3
snR49	snR49	GPI10	P30777	616 aa		0.67	□□□□□ -2.3
snR49	snR49	SKG6	P32900	734 aa	Predicted RBP	0.67	□□□□□ -2.3
snR49	snR49	MET18	P40469	1032 aa		0.67	□□□□□ -2.3
snR49	snR49	JJJ1	P53863	590 aa		0.67	□□□□□ -2.3
snR49	snR49	PRP38	Q00723	242 aa	Predicted RBP	0.67	□□□□□ -2.3
snR49	snR49	IMA2	Q08295	589 aa		0.67	□□□□□ -2.3
snR49	snR49	SRO7	Q12038	1033 aa		0.67	□□□□□ -2.3
snR49	snR49	HSP42	Q12329	375 aa		0.67	□□□□□ -2.3
snR49	snR49	HTZ1	Q12692	134 aa	Known RBP	0.67	□□□□□ -2.3
snR49	snR49	HOM3	P10869	527 aa		0.66	□□□□□ -2.3
snR49	snR49	DBF4	P32325	704 aa		0.66	□□□□□ -2.3
snR49	snR49	TKL2	P33315	681 aa		0.66	□□□□□ -2.3
snR49	snR49	VPS24	P36095	224 aa	Known RBP	0.66	□□□□□ -2.3
snR49	snR49	MMS4	P38257	691 aa		0.66	□□□□□ -2.3
snR49	snR49	LSM12	P38828	187 aa	Known RBP	0.66	□□□□□ -2.3
snR49	snR49	HEM14	P40012	539 aa		0.66	□□□□□ -2.3
snR49	snR49	SPO22	P40511	975 aa		0.66	□□□□□ -2.3
snR49	snR49	FMS1	P50264	508 aa		0.66	□□□□□ -2.3
snR49	snR49	BIO3	P50277	480 aa		0.66	□□□□□ -2.3
snR49	snR49	ASA1	Q06822	443 aa		0.66	□□□□□ -2.3
snR49	snR49	VAM3	Q12241	283 aa		0.66	□□□□□ -2.3
snR49	snR49	ENT1	Q12518	454 aa		0.66	□□□□□ -2.3
snR49	snR49	RPL3	P14126	387 aa	Known RBP	0.65	□□□□□ -2.31
snR49	snR49	RAD5	P32849	1169 aa	Predicted RBP	0.65	□□□□□ -2.31
snR49	snR49	VAC7	P53950	1165 aa		0.65	□□□□□ -2.31
snR49	snR49	STD1	Q02794	444 aa		0.65	□□□□□ -2.31
snR49	snR49	MSC3	Q05812	728 aa		0.65	□□□□□ -2.31
snR49	snR49	YAL067W-A	Q8TGK6	75 aa		0.65	□□□□□ -2.31
snR49	snR49	SSC1	P0CS90	654 aa	Known RBP	0.64	□□□□□ -2.31
snR49	snR49	CKA2	P19454	339 aa		0.64	□□□□□ -2.31
snR49	snR49	SKT5	P34226	696 aa		0.64	□□□□□ -2.31
snR49	snR49	YBL081W	P38180	368 aa	Known RBP	0.64	□□□□□ -2.31
snR49	snR49	FUI1	P38196	639 aa		0.64	□□□□□ -2.31
snR49	snR49	ECM8	P38246	354 aa		0.64	□□□□□ -2.31
snR49	snR49	TPM2	P40414	161 aa		0.64	□□□□□ -2.31
snR49	snR49	RRP46	P53256	223 aa	Predicted RBP	0.64	□□□□□ -2.31
snR49	snR49	RMI1	Q02685	241 aa		0.64	□□□□□ -2.31
snR49	snR49	BUG1	Q12191	341 aa		0.64	□□□□□ -2.31
snR49	snR49	FRE8	Q12209	686 aa		0.64	□□□□□ -2.31
snR49	snR49	LDB17	Q12342	491 aa		0.64	□□□□□ -2.31
snR49	snR49	PWP2	P25635	923 aa	Known RBP	0.63	□□□□□ -2.31
snR49	snR49	RRN10	P38204	145 aa		0.63	□□□□□ -2.31
snR49	snR49	YGL088W	P53151	121 aa		0.63	□□□□□ -2.31
snR49	snR49	VTI1	Q04338	217 aa		0.63	□□□□□ -2.31
snR49	snR49	VTA1	Q06263	330 aa		0.63	□□□□□ -2.31
snR49	snR49	PLB3	Q08108	686 aa		0.63	□□□□□ -2.31
snR49	snR49	POM152	P39685	1337 aa		0.63	□□□□□ -2.31
snR49	snR49	MIG1	P27705	504 aa		0.62	□□□□□ -2.31
snR49	snR49	NIP1	P32497	812 aa	Known RBP	0.62	□□□□□ -2.31
snR49	snR49	MMT1	Q03218	510 aa		0.62	□□□□□ -2.31
snR49	snR49	YDR056C	Q12025	205 aa		0.62	□□□□□ -2.31
snR49	snR49	SFM1	Q12314	213 aa		0.62	□□□□□ -2.31
snR49	snR49	RPS18A	P0CX55	146 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	RPS18B	P0CX56	146 aa	Predicted RBP	0.61	□□□□□ -2.31
snR49	snR49	SSH4	P32343	579 aa		0.61	□□□□□ -2.31
snR49	snR49	SPS19	P32573	292 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	ANP1	P32629	500 aa		0.61	□□□□□ -2.31
snR49	snR49	SPO23	P33757	523 aa		0.61	□□□□□ -2.31
snR49	snR49	YBR241C	P38142	488 aa		0.61	□□□□□ -2.31
snR49	snR49	SHE3	P38272	425 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	VHS2	P40463	436 aa		0.61	□□□□□ -2.31
snR49	snR49	UFE1	P41834	346 aa		0.61	□□□□□ -2.31
snR49	snR49	BAT2	P47176	376 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	TRF5	P48561	642 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	MNP1	P53163	194 aa	Predicted RBP	0.61	□□□□□ -2.31
snR49	snR49	RNH201	P53942	307 aa		0.61	□□□□□ -2.31
snR49	snR49	REX2	P54964	269 aa	Known RBP	0.61	□□□□□ -2.31
snR49	snR49	MRX11	Q03079	207 aa		0.61	□□□□□ -2.31
snR49	snR49	COG4	Q06096	861 aa		0.61	□□□□□ -2.31
snR49	snR49	FLO11	P08640	1367 aa		0.6	□□□□□ -2.31
snR49	snR49	ALG1	P16661	449 aa		0.6	□□□□□ -2.31
snR49	snR49	ECM14	P38836	430 aa		0.6	□□□□□ -2.31
snR49	snR49	CTK3	P46963	296 aa	Predicted RBP	0.6	□□□□□ -2.31
snR49	snR49	COS5	P47187	383 aa		0.6	□□□□□ -2.31
snR49	snR49	ASN2	P49090	572 aa	Known RBP	0.6	□□□□□ -2.31
snR49	snR49	RPA49	Q01080	415 aa	Predicted RBP	0.6	□□□□□ -2.31
snR49	snR49	SPR6	Q01684	191 aa		0.6	□□□□□ -2.31
snR49	snR49	CDD1	Q06549	142 aa		0.6	□□□□□ -2.31
snR49	snR49	COS7	Q07788	383 aa		0.6	□□□□□ -2.31
snR49	snR49	YDL211C	Q12121	372 aa		0.6	□□□□□ -2.31
snR49	snR49	HIF1	Q12373	385 aa		0.6	□□□□□ -2.31
snR49	snR49	GRX6	Q12438	231 aa		0.6	□□□□□ -2.31
snR49	snR49	ADE4	P04046	510 aa	Known RBP	0.59	□□□□□ -2.31
snR49	snR49	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
snR49	snR49	ATP1	P07251	545 aa	Known RBP	0.59	□□□□□ -2.31
snR49	snR49	COX10	P21592	462 aa		0.59	□□□□□ -2.31
snR49	snR49	CHA1	P25379	360 aa	Known RBP	0.59	□□□□□ -2.31
snR49	snR49	RAD23	P32628	398 aa	Known RBP	0.59	□□□□□ -2.31
snR49	snR49	GPX2	P38143	162 aa		0.59	□□□□□ -2.31
snR49	snR49	BDH1	P39714	382 aa		0.59	□□□□□ -2.31
snR49	snR49	RBG1	P39729	369 aa		0.59	□□□□□ -2.31
snR49	snR49	MNN5	P46982	586 aa		0.59	□□□□□ -2.31
snR49	snR49	YGR117C	P53270	476 aa		0.59	□□□□□ -2.31
snR49	snR49	YMR155W	Q03795	547 aa		0.59	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms