RNA–Protein interactions for RNA: YNL224C

SQS1, Transcript of Protein that stimulates the ATPase and helicase activities of Prp43p, yeast

Gene SQS1, Length 2,304 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SQS1	YNL224C	NRT1	Q08485	598 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	MRX4	Q12467	430 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	FMP16	Q12497	93 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	PRM4	Q12498	284 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-H	O13535	1793 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-DR5	P0C2I2	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-DR6	P0C2I3	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-LR2	P0C2I5	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-PR2	P0C2J0	1756 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-JR1	P47098	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-ML2	Q03434	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-ER1	Q03612	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-ML1	Q04711	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-GR2	Q12269	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-OL	Q12273	1755 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TY1B-PL	Q12414	1755 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	TAF2	P23255	1407 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	GEA1	P47102	1408 aa	Predicted RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	ADE4	P04046	510 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	RPS18A	P0CX55	146 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	RPS18B	P0CX56	146 aa	Predicted RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	NUP1	P20676	1076 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	PTC6	P25646	442 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	DGR2	P32330	852 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	CBT1	P36038	271 aa	Predicted RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	SHO1	P40073	367 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	DSE1	P40077	573 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	CFD1	P40558	293 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	SSU1	P41930	458 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	YCH1	P42937	148 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	RPE1	P46969	238 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	YJL118W	P47022	219 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	APT1	P49435	187 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	YGL235W	P53071	178 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	NRK1	P53915	240 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	ARG5,6	Q01217	863 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	YMR226C	Q05016	267 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	YLR225C	Q05948	407 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	NOC4	Q06512	552 aa	Predicted RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	GUD1	Q07729	489 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	YPL199C	Q08954	240 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	LYS21	Q12122	440 aa	Known RBP	3.15	□□□□□ -1.9
SQS1	YNL224C	NSL1	Q12143	216 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	SNF8	Q12483	233 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	PSF1	Q12488	208 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	CTF3	Q12748	733 aa		3.15	□□□□□ -1.9
SQS1	YNL224C	COX2	P00410	251 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	RPL27A	P0C2H6	136 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	RPL27B	P0C2H7	136 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	RPS1B	P23248	255 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	PRE8	P23639	250 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	MCM5	P29496	775 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	SRB5	P32585	307 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
SQS1	YNL224C	OAR1	P35731	278 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	ZTA1	P38230	334 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	PFS1	P38872	237 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	PRP39	P39682	629 aa	Known RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	ERV46	P39727	415 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YAL037W	P39728	267 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	HXT13	P39924	564 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	UBP5	P39944	805 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	LAS21	P40367	830 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YIR016W	P40572	265 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	MOG1	P47123	218 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	HXT17	P53631	564 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	HXT15	P54854	567 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YDR541C	Q03049	344 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YMR160W	Q03823	816 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	RPC11	Q04307	110 aa	Predicted RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	TMN2	Q04562	672 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	RRG8	Q06109	277 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	IZH3	Q07959	543 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	RCL1	Q08096	367 aa	Predicted RBP	3.15	□□□□□ -1.91
SQS1	YNL224C	TPO4	Q12256	659 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YOR214C	Q12282	236 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YOP1	Q12402	180 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	YGL194C-A	Q2V2P6	80 aa		3.15	□□□□□ -1.91
SQS1	YNL224C	AUS1	Q08409	1394 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	CBP1	P07252	654 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	NUC1	P08466	329 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	CLN3	P13365	580 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	SAG1	P20840	650 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	SCL1	P21243	252 aa	Known RBP	3.14	□□□□□ -1.91
SQS1	YNL224C	MCK1	P21965	375 aa	Known RBP	3.14	□□□□□ -1.91
SQS1	YNL224C	CSM1	P25651	190 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	SEC65	P29478	273 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	SCM4	P32564	187 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	TRM2	P33753	639 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	WBP1	P33767	430 aa	Known RBP	3.14	□□□□□ -1.91
SQS1	YNL224C	RPC25	P35718	212 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	ADD66	P36040	267 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	LDB7	P38210	180 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	YBR197C	P38306	217 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	PCA1	P38360	1216 aa		3.14	□□□□□ -1.91
SQS1	YNL224C	PRS3	P38689	320 aa	Known RBP	3.14	□□□□□ -1.91
SQS1	YNL224C	YHR112C	P38716	378 aa		3.14	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms