RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W POM152P39685 1337 aa0.59□□□□□ -2.32
PRP42YDR235W COX3P00420 269 aa0.59□□□□□ -2.32
PRP42YDR235W ARO3P14843 370 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W ZRC1P20107 442 aa0.59□□□□□ -2.32
PRP42YDR235W ADK2P26364 225 aa0.59□□□□□ -2.32
PRP42YDR235W ERV1P27882 189 aa0.59□□□□□ -2.32
PRP42YDR235W AGA2P32781 87 aa0.59□□□□□ -2.32
PRP42YDR235W NFU1P32860 256 aa0.59□□□□□ -2.32
PRP42YDR235W SKN1P33336 771 aa0.59□□□□□ -2.32
PRP42YDR235W BYE1P36106 594 aa0.59□□□□□ -2.32
PRP42YDR235W JNM1P36224 373 aa0.59□□□□□ -2.32
PRP42YDR235W ASC1P38011 319 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W ECM8P38246 354 aa0.59□□□□□ -2.32
PRP42YDR235W SLM4P38247 162 aa0.59□□□□□ -2.32
PRP42YDR235W SPO73P40031 143 aa0.59□□□□□ -2.32
PRP42YDR235W MMF1P40185 145 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W GAT2P40209 560 aa0.59□□□□□ -2.32
PRP42YDR235W YPS6P40583 537 aa0.59□□□□□ -2.32
PRP42YDR235W CAK1P43568 368 aaPredicted RBP0.59□□□□□ -2.32
PRP42YDR235W CPR7P47103 393 aa0.59□□□□□ -2.32
PRP42YDR235W PIB2P53191 635 aa0.59□□□□□ -2.32
PRP42YDR235W RPN14P53196 417 aa0.59□□□□□ -2.32
PRP42YDR235W YGR250CP53316 781 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W RPT4P53549 437 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W BNI5P53890 448 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W SUB1P54000 292 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W SKI8Q02793 397 aaPredicted RBP0.59□□□□□ -2.32
PRP42YDR235W PRP42Q03776 544 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W RPN9Q04062 393 aaKnown RBP0.59□□□□□ -2.32
PRP42YDR235W PRM6Q04705 352 aa0.59□□□□□ -2.32
PRP42YDR235W MMR1Q06324 491 aa0.59□□□□□ -2.32
PRP42YDR235W HRT1Q08273 121 aa0.59□□□□□ -2.32
PRP42YDR235W MED2Q12124 431 aa0.59□□□□□ -2.32
PRP42YDR235W APC2Q12440 853 aa0.59□□□□□ -2.32
PRP42YDR235W CDC21P06785 304 aa0.58□□□□□ -2.32
PRP42YDR235W SSC1P0CS90 654 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W ALG1P16661 449 aa0.58□□□□□ -2.32
PRP42YDR235W CMK2P22517 447 aa0.58□□□□□ -2.32
PRP42YDR235W URA7P28274 579 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W DEP1P31385 405 aa0.58□□□□□ -2.32
PRP42YDR235W RIM1P32445 135 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W NIP1P32497 812 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W YEF1P32622 495 aa0.58□□□□□ -2.32
PRP42YDR235W RAD5P32849 1169 aaPredicted RBP0.58□□□□□ -2.32
PRP42YDR235W ZTA1P38230 334 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W WSC4P38739 605 aa0.58□□□□□ -2.32
PRP42YDR235W WSS1P38838 269 aa0.58□□□□□ -2.32
PRP42YDR235W GPI16P38875 610 aa0.58□□□□□ -2.32
PRP42YDR235W LSM5P40089 93 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W VHS2P40463 436 aa0.58□□□□□ -2.32
PRP42YDR235W TRM112P53738 135 aaPredicted RBP0.58□□□□□ -2.32
PRP42YDR235W COS1P53822 381 aa0.58□□□□□ -2.32
PRP42YDR235W RPL21AQ02753 160 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W ERB1Q04660 807 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W YLR345WQ06137 509 aa0.58□□□□□ -2.32
PRP42YDR235W AEP3Q12089 606 aa0.58□□□□□ -2.32
PRP42YDR235W FCY22Q12119 530 aa0.58□□□□□ -2.32
PRP42YDR235W SCM3Q12334 223 aa0.58□□□□□ -2.32
PRP42YDR235W YDL199CQ12407 687 aa0.58□□□□□ -2.32
PRP42YDR235W RPL21BQ12672 160 aaKnown RBP0.58□□□□□ -2.32
PRP42YDR235W STE7P06784 515 aa0.57□□□□□ -2.32
PRP42YDR235W PUT4P15380 627 aa0.57□□□□□ -2.32
PRP42YDR235W CLB1P24868 471 aa0.57□□□□□ -2.32
PRP42YDR235W SLM5P25345 492 aaKnown RBP0.57□□□□□ -2.32
PRP42YDR235W HSP104P31539 908 aaKnown RBP0.57□□□□□ -2.32
PRP42YDR235W ECT1P33412 323 aa0.57□□□□□ -2.32
PRP42YDR235W SKT5P34226 696 aa0.57□□□□□ -2.32
PRP42YDR235W SOL2P37262 315 aa0.57□□□□□ -2.32
PRP42YDR235W OLA1P38219 394 aaKnown RBP0.57□□□□□ -2.32
PRP42YDR235W INM1P38710 295 aa0.57□□□□□ -2.32
PRP42YDR235W GEP4P38812 185 aa0.57□□□□□ -2.32
PRP42YDR235W STN1P38960 494 aa0.57□□□□□ -2.32
PRP42YDR235W NAB3P38996 802 aaKnown RBP RIP-Chip data0.57□□□□□ -2.32not detected
PRP42YDR235W PEX22P39718 180 aa0.57□□□□□ -2.32
PRP42YDR235W FRT2P39734 528 aa0.57□□□□□ -2.32
PRP42YDR235W SER3P40054 469 aa0.57□□□□□ -2.32
PRP42YDR235W ATM1P40416 690 aa0.57□□□□□ -2.32
PRP42YDR235W ZIM17P42844 174 aa0.57□□□□□ -2.32
PRP42YDR235W AIP1P46680 615 aaKnown RBP0.57□□□□□ -2.32
PRP42YDR235W SRB7P47822 140 aa0.57□□□□□ -2.32
PRP42YDR235W YGR117CP53270 476 aa0.57□□□□□ -2.32
PRP42YDR235W REX2P54964 269 aaKnown RBP0.57□□□□□ -2.32
PRP42YDR235W YDR131CQ03899 556 aa0.57□□□□□ -2.32
PRP42YDR235W YDL114WQ07530 308 aa0.57□□□□□ -2.32
PRP42YDR235W RUP1Q12242 671 aa0.57□□□□□ -2.32
PRP42YDR235W PCL9Q12477 304 aa0.57□□□□□ -2.32
PRP42YDR235W PAB1P04147 577 aaKnown RBP RIP-Chip data0.56□□□□□ -2.32not detected
PRP42YDR235W OPI3P05375 206 aa0.56□□□□□ -2.32
PRP42YDR235W TPK3P05986 398 aa0.56□□□□□ -2.32
PRP42YDR235W PDE2P06776 526 aa0.56□□□□□ -2.32
PRP42YDR235W RPS19AP07280 144 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W RPS19BP07281 144 aaPredicted RBP0.56□□□□□ -2.32
PRP42YDR235W RPS18AP0CX55 146 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W RPS18BP0CX56 146 aaPredicted RBP0.56□□□□□ -2.32
PRP42YDR235W ASP3-2P0CX77 362 aa0.56□□□□□ -2.32
PRP42YDR235W ASP3-3P0CX78 362 aa0.56□□□□□ -2.32
PRP42YDR235W ASP3-4P0CX79 362 aa0.56□□□□□ -2.32
PRP42YDR235W ASP3-1P0CZ17 362 aa0.56□□□□□ -2.32
PRP42YDR235W ARF1P11076 181 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W PDX1P16451 410 aa0.56□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms