RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MARCH8	Q5T0T0	291 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	RSPH3	Q86UC2	560 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	DGKH	Q86XP1	1220 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	AMN	Q9BXJ7	453 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	DCTPP1	Q9H773	170 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	KAT14	Q9H8E8	782 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	LIMD1	Q9UGP4	676 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	TUBE1	Q9UJT0	475 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	PADI3	Q9ULW8	664 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	NCOR2	Q9Y618	2525 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	HIDE1	A8MVS5	230 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	CCER2	I3L3R5	266 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	PARP1	P09874	1014 aa	Known RBP	13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	SRGAP2B	P0DMP2	458 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	MARK3	P27448	753 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	MRPS6	P82932	125 aa	Known RBP	13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	PPFIA1	Q13136	1202 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	NEDD9	Q14511	834 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	GRIK4	Q16099	956 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	ASPRV1	Q53RT3	343 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	THNSL1	Q8IYQ7	743 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	STAG2	Q8N3U4	1231 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	FAM227B	Q96M60	508 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	TMX1	Q9H3N1	280 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	LRFN2	Q9ULH4	789 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	PCDHA1	Q9Y5I3	950 aa		13.63	□□□□□ -0.23
CLK3-222	ENST00000568232	CACNA1B	Q00975	2339 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	FSD2	A1L4K1	749 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	TBKBP1	A7MCY6	615 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	TRIM6-TRIM34	B2RNG4	842 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	NPR3	P17342	541 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	IGBP1	P78318	339 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	TMEM266	Q2M3C6	531 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	GNPTAB	Q3T906	1256 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	FAM102B	Q5T8I3	360 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	COLGALT1	Q8NBJ5	622 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	RASGRP4	Q8TDF6	673 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	INPP4A	Q96PE3	977 aa	Predicted RBP	13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	FTHL17	Q9BXU8	183 aa		13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	TYW1	Q9NV66	732 aa	Known RBP	13.62	□□□□□ -0.23
CLK3-222	ENST00000568232	MAP3K20	Q9NYL2	800 aa	Known RBP	13.62	□□□□□ -0.23
CLK3-222	ENST00000568232		A0A0D9SFI3	127 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	LMNA	P02545	664 aa	Known RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	POLR2M	P0CAP2	368 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	HOXB8	P17481	243 aa	Predicted RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	AOC1	P19801	751 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	TCF7	P36402	384 aa	Predicted RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	PDE12	Q6L8Q7	609 aa	Known RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	KANK3	Q6NY19	840 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	CCDC105	Q8IYK2	499 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	ESR2	Q92731	530 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	TCF25	Q9BQ70	676 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	CHMP4B	Q9H444	224 aa	Known RBP	13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	ENTPD7	Q9NQZ7	604 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	AAAS	Q9NRG9	546 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	HELLS	Q9NRZ9	838 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	PCDHB7	Q9Y5E2	793 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232		R4GN57	208 aa		13.61	□□□□□ -0.23
CLK3-222	ENST00000568232	ZBTB5	O15062	677 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	FIBP	O43427	364 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	MGEA5	O60502	916 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	PAK2	Q13177	524 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	C20orf194	Q5TEA3	1177 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	IER5	Q5VY09	327 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	CES5A	Q6NT32	575 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	ENAH	Q8N8S7	591 aa	Predicted RBP	13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	DTWD2	Q8NBA8	298 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	FEZF2	Q8TBJ5	459 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	MTMR8	Q96EF0	704 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	ADAM7	Q9H2U9	754 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	CWH43	Q9H720	699 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	DOCK5	Q9H7D0	1870 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	CFAP47	Q6ZTR5	3102 aa		13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	EP300	Q09472	2414 aa	Predicted RBP	13.6	□□□□□ -0.23
CLK3-222	ENST00000568232	SARS	P49591	514 aa	Known RBP	13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	NFX1	Q12986	1120 aa	Known RBP	13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	SLC35G1	Q2M3R5	365 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	MCMDC2	Q4G0Z9	681 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	HOMER1	Q86YM7	354 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	DCLK2	Q8N568	766 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	SAMD3	Q8N6K7	520 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	C12orf76	Q8N812	135 aa	Predicted RBP	13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	MRPS27	Q92552	414 aa	Known RBP	13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	NECTIN4	Q96NY8	510 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	DLL3	Q9NYJ7	618 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	PCDHB8	Q9UN66	801 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	TRPV2	Q9Y5S1	764 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	HCFC2	Q9Y5Z7	792 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	SQOR	Q9Y6N5	450 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	IGSF9B	Q9UPX0	1349 aa		13.59	□□□□□ -0.23
CLK3-222	ENST00000568232	GSTTP1	A0A1W2PQM5	241 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232		B4E1Z4	1266 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	KLRF2	D3W0D1	207 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms