RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W REX3Q12090 404 aa7.71□□□□□ -1.18
UFD1YGR048W PSF3Q12146 194 aa7.71□□□□□ -1.18
UFD1YGR048W CDC28P00546 298 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W HIS5P07172 385 aa7.7□□□□□ -1.18
UFD1YGR048W CAR2P07991 424 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W CIT2P08679 460 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-LR4P0C2I8 440 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W ERR1P0CX10 437 aa7.7□□□□□ -1.18
UFD1YGR048W ERR2P0CX11 437 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-DR6P0CX70 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-ER1P0CX71 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-LR2P0CX72 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-PLP0CX73 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-JR1P0CX74 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-LR3P0CX75 440 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-ML2P0CX76 440 aa7.7□□□□□ -1.18
UFD1YGR048W MAS2P11914 482 aa7.7□□□□□ -1.18
UFD1YGR048W CKS1P20486 150 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W SIR1P21691 654 aa7.7□□□□□ -1.18
UFD1YGR048W IFM1P25038 676 aa7.7□□□□□ -1.18
UFD1YGR048W BUB2P26448 306 aaPredicted RBP7.7□□□□□ -1.18
UFD1YGR048W SNC1P31109 117 aa7.7□□□□□ -1.18
UFD1YGR048W ACB1P31787 87 aa7.7□□□□□ -1.18
UFD1YGR048W FRE2P36033 711 aa7.7□□□□□ -1.18
UFD1YGR048W BMT2P38278 337 aa7.7□□□□□ -1.18
UFD1YGR048W PCM1P38628 557 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W NVJ1P38881 321 aa7.7□□□□□ -1.18
UFD1YGR048W TOK1P40310 691 aa7.7□□□□□ -1.18
UFD1YGR048W YIL166CP40445 542 aa7.7□□□□□ -1.18
UFD1YGR048W ERR3P42222 437 aa7.7□□□□□ -1.18
UFD1YGR048W YFL012WP43580 148 aa7.7□□□□□ -1.18
UFD1YGR048W MPS3P47069 682 aa7.7□□□□□ -1.18
UFD1YGR048W JJJ3P47138 172 aa7.7□□□□□ -1.18
UFD1YGR048W ABM1P47146 123 aa7.7□□□□□ -1.18
UFD1YGR048W THI11P47183 340 aa7.7□□□□□ -1.18
UFD1YGR048W LYS20P48570 428 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W YGL117WP53133 265 aa7.7□□□□□ -1.18
UFD1YGR048W PUS2P53167 370 aa7.7□□□□□ -1.18
UFD1YGR048W VPS62P53285 467 aa7.7□□□□□ -1.18
UFD1YGR048W BUD32P53323 261 aa7.7□□□□□ -1.18
UFD1YGR048W YNL181WP53878 407 aa7.7□□□□□ -1.18
UFD1YGR048W ALG11P53954 548 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W DPB4Q04603 196 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W SMA2Q04658 369 aa7.7□□□□□ -1.18
UFD1YGR048W RCO1Q04779 684 aa7.7□□□□□ -1.18
UFD1YGR048W YDL121CQ07541 149 aa7.7□□□□□ -1.18
UFD1YGR048W RRP40Q08285 240 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W RRG7Q08774 242 aaPredicted RBP7.7□□□□□ -1.18
UFD1YGR048W TY1A-GR1Q12085 440 aa7.7□□□□□ -1.18
UFD1YGR048W SPC3Q12133 184 aa7.7□□□□□ -1.18
UFD1YGR048W TY1A-PR3Q6Q5H1 440 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W TY1A-OLQ92392 440 aaKnown RBP7.7□□□□□ -1.18
UFD1YGR048W MDH1P17505 334 aaKnown RBP RIP-Chip data7.69□□□□□ -1.18not detected
UFD1YGR048W MLF3P32047 452 aa7.69□□□□□ -1.18
UFD1YGR048W PTK1P36002 662 aaPredicted RBP7.69□□□□□ -1.18
UFD1YGR048W MRPL16P38064 232 aa7.69□□□□□ -1.18
UFD1YGR048W APL3P38065 1025 aa7.69□□□□□ -1.18
UFD1YGR048W GLR1P41921 483 aaKnown RBP7.69□□□□□ -1.18
UFD1YGR048W NSE4P43124 402 aa7.69□□□□□ -1.18
UFD1YGR048W MRX5P47007 382 aa7.69□□□□□ -1.18
UFD1YGR048W AIM22P47051 409 aa7.69□□□□□ -1.18
UFD1YGR048W AIF1P52923 378 aa7.69□□□□□ -1.18
UFD1YGR048W GIM3P53900 129 aa7.69□□□□□ -1.18
UFD1YGR048W YNL146WP53906 100 aa7.69□□□□□ -1.18
UFD1YGR048W RRN5Q02983 363 aa7.69□□□□□ -1.18
UFD1YGR048W SCP1Q08873 200 aa7.69□□□□□ -1.18
UFD1YGR048W ATX2Q12067 313 aa7.69□□□□□ -1.18
UFD1YGR048W NMD4Q12129 218 aa7.69□□□□□ -1.18
UFD1YGR048W YLR126CQ12288 251 aa7.69□□□□□ -1.18
UFD1YGR048W SFM1Q12314 213 aa7.69□□□□□ -1.18
UFD1YGR048W Q0182Q9ZZW1 134 aa7.69□□□□□ -1.18
UFD1YGR048W SCEIP03882 235 aa7.68□□□□□ -1.18
UFD1YGR048W FUR4P05316 633 aaKnown RBP7.68□□□□□ -1.18
UFD1YGR048W SSA3P09435 649 aaKnown RBP7.68□□□□□ -1.18
UFD1YGR048W MRP1P10662 321 aaKnown RBP7.68□□□□□ -1.18
UFD1YGR048W GRR1P24814 1151 aa7.68□□□□□ -1.18
UFD1YGR048W PEX34P25584 144 aa7.68□□□□□ -1.18
UFD1YGR048W IDH1P28834 360 aaKnown RBP RIP-Chip data7.68□□□□□ -1.18not detected
UFD1YGR048W BEM1P29366 551 aa7.68□□□□□ -1.18
UFD1YGR048W PAH1P32567 862 aa7.68□□□□□ -1.18
UFD1YGR048W LHP1P33399 275 aaKnown RBP7.68□□□□□ -1.18
UFD1YGR048W ECT1P33412 323 aa7.68□□□□□ -1.18
UFD1YGR048W SEF1P34228 1148 aa7.68□□□□□ -1.18
UFD1YGR048W MRPL15P36523 253 aa7.68□□□□□ -1.18
UFD1YGR048W MAL32P38158 584 aa7.68□□□□□ -1.18
UFD1YGR048W MMS4P38257 691 aa7.68□□□□□ -1.18
UFD1YGR048W PRS3P38689 320 aaKnown RBP7.68□□□□□ -1.18
UFD1YGR048W AIM18P38884 321 aa7.68□□□□□ -1.18
UFD1YGR048W YEN1P40028 759 aa7.68□□□□□ -1.18
UFD1YGR048W NTA1P40354 457 aa7.68□□□□□ -1.18
UFD1YGR048W PTR3P43606 678 aa7.68□□□□□ -1.18
UFD1YGR048W HXT16P47185 567 aa7.68□□□□□ -1.18
UFD1YGR048W MAL12P53341 584 aa7.68□□□□□ -1.18
UFD1YGR048W RRN9P53437 365 aa7.68□□□□□ -1.18
UFD1YGR048W HCH1P53834 153 aa7.68□□□□□ -1.18
UFD1YGR048W TPP1Q03796 238 aa7.68□□□□□ -1.18
UFD1YGR048W DIN7Q12086 430 aa7.68□□□□□ -1.18
UFD1YGR048W YLR046CQ12253 270 aa7.68□□□□□ -1.18
UFD1YGR048W MHF2Q3E829 80 aa7.68□□□□□ -1.18
UFD1YGR048W PRC1P00729 532 aa7.67□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms