RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ELF4Q99607 663 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-209ENST00000553280 MTA3Q9BTC8 594 aa6.63□□□□□ -1.35
SCFD1-209ENST00000553280 SLC6A20Q9NP91 592 aa6.63□□□□□ -1.35
SCFD1-209ENST00000553280 ANKRD6Q9Y2G4 727 aa6.63□□□□□ -1.35
SCFD1-209ENST00000553280 COA3Q9Y2R0 106 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-209ENST00000553280 RIPOR2Q9Y4F9 1068 aa6.63□□□□□ -1.35
SCFD1-209ENST00000553280 TRIM75PA6NK02 468 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 DBX1A6NMT0 343 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 MAN2B1O00754 1011 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 PRPF3O43395 683 aaKnown RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 MT-CO1P00395 513 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 KRT18P05783 430 aaKnown RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 KIR2DL1P43626 348 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 KIR2DL2P43627 348 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 GFOD2Q3B7J2 385 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 TMEM240Q5SV17 173 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 MROH9Q5TGP6 573 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 SYDE1Q6ZW31 735 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 NOSTRINQ8IVI9 506 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 NLGN4XQ8N0W4 816 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 SH3RF2Q8TEC5 729 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 DLG3Q92796 817 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 ARNT2Q9HBZ2 717 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 ACSS2Q9NR19 701 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 TOPORSQ9NS56 1045 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 EBF1Q9UH73 591 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 DSEQ9UL01 958 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 PNMA8BQ9ULN7 279 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 NOC2LQ9Y3T9 749 aaKnown RBP6.62□□□□□ -1.35
SCFD1-209ENST00000553280 B3GALT1Q9Y5Z6 326 aa6.62□□□□□ -1.35
SCFD1-209ENST00000553280 CLASP2O75122 1294 aaKnown RBP6.61□□□□□ -1.35
SCFD1-209ENST00000553280 CYP17A1P05093 508 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 CT47B1P0C2W7 299 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-209ENST00000553280 DUSP4Q13115 394 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 UBE4AQ14139 1066 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 LRRC32Q14392 662 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 FIGNQ5HY92 759 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 EP400NLQ6ZTU2 488 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 LZTR1Q8N653 840 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 PIP4K2CQ8TBX8 421 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 LMBR1Q8WVP7 490 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 PMM1Q92871 262 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 ZDHHC5Q9C0B5 715 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 RNF32Q9H0A6 362 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 TOMM22Q9NS69 142 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 MKS1Q9NXB0 559 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 SRPK3Q9UPE1 567 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 GIT1Q9Y2X7 761 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 MRFAP1Q9Y605 127 aa6.61□□□□□ -1.35
SCFD1-209ENST00000553280 LOC102724159A0A0B4J2E5 919 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 GOLGA8AA7E2F4 631 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 GOLGA8BA8MQT2 603 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 KRIT1O00522 736 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 KCNK3O14649 394 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 HIP1RO75146 1068 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 KIF11P52732 1056 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 SCAND1P57086 179 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 RHBDL3P58872 404 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 TCIRG1Q13488 830 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 PWP2Q15269 919 aaKnown RBP6.6□□□□□ -1.35
SCFD1-209ENST00000553280 TIGD5Q53EQ6 642 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 FSTL4Q6MZW2 842 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 CC2D1AQ6P1N0 951 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-209ENST00000553280 PNMA8AQ86V59 439 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-209ENST00000553280 TPH2Q8IWU9 490 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 CMIPQ8IY22 773 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 PDZD8Q8NEN9 1154 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 UHMK1Q8TAS1 419 aaKnown RBP6.6□□□□□ -1.35
SCFD1-209ENST00000553280 USP33Q8TEY7 942 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 PCIF1Q9H4Z3 704 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 ZMAT4Q9H898 229 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 SP110Q9HB58 689 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 RWDD3Q9Y3V2 267 aa6.6□□□□□ -1.35
SCFD1-209ENST00000553280 SCDO00767 359 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PLIN1O60240 522 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA12O60330 932 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 MYL1P05976 194 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PF4V1P10720 104 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 GPR3P46089 330 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 RAP1GAPP47736 663 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 GALK1P51570 392 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 RTP1P59025 263 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 GTF2H3Q13889 308 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 ODF1Q14990 250 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 CYP4F22Q6NT55 531 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 FRMD7Q6ZUT3 714 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 DGKHQ86XP1 1220 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 ZZZ3Q8IYH5 903 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 OXR1Q8N573 874 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 FBXO15Q8NCQ5 510 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-209ENST00000553280 EPB41L4BQ9H329 900 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 MYH16Q9H6N6 1097 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 DCP1AQ9NPI6 582 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-209ENST00000553280 KCNH7Q9NS40 1196 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 NUB1Q9Y5A7 615 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA9Q9Y5G4 932 aaKnown RBP6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA8Q9Y5G5 932 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA7Q9Y5G6 932 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA6Q9Y5G7 932 aa6.59□□□□□ -1.35
SCFD1-209ENST00000553280 PCDHGA3Q9Y5H0 932 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms