RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C COX4P04037 155 aa1.63□□□□□ -2.15
PCF11YDR228C GFD2P25370 566 aaKnown RBP1.63□□□□□ -2.15
PCF11YDR228C RHB1P25378 209 aa1.63□□□□□ -2.15
PCF11YDR228C YKL097CP34245 136 aa1.63□□□□□ -2.15
PCF11YDR228C SOR1P35497 357 aaKnown RBP1.63□□□□□ -2.15
PCF11YDR228C ANR2P36090 516 aaPredicted RBP1.63□□□□□ -2.15
PCF11YDR228C OM14P38325 134 aa1.63□□□□□ -2.15
PCF11YDR228C OTU2P38747 307 aaKnown RBP1.63□□□□□ -2.15
PCF11YDR228C ARF3P40994 183 aaRIP-Chip data1.63□□□□□ -2.15not detected
PCF11YDR228C IRC6P43615 237 aa1.63□□□□□ -2.15
PCF11YDR228C RPS0BP46654 252 aaKnown RBP1.63□□□□□ -2.15
PCF11YDR228C MRPS16Q02608 121 aa1.63□□□□□ -2.15
PCF11YDR228C OAZ1Q02803 292 aa1.63□□□□□ -2.15
PCF11YDR228C SOR2Q07786 357 aa1.63□□□□□ -2.15
PCF11YDR228C SIL1Q08199 421 aa1.63□□□□□ -2.15
PCF11YDR228C SMF3Q12078 473 aaPredicted RBP1.63□□□□□ -2.15
PCF11YDR228C MED1Q12321 566 aa1.63□□□□□ -2.15
PCF11YDR228C NAM2P11325 894 aa1.63□□□□□ -2.15
PCF11YDR228C ROX1P25042 368 aa1.63□□□□□ -2.15
PCF11YDR228C OXA1P39952 402 aa1.63□□□□□ -2.15
PCF11YDR228C ATG18P43601 500 aa1.63□□□□□ -2.15
PCF11YDR228C PHO86P46956 311 aa1.63□□□□□ -2.15
PCF11YDR228C BIR1P47134 954 aa1.63□□□□□ -2.15
PCF11YDR228C MST27P53176 234 aa1.63□□□□□ -2.15
PCF11YDR228C GIP3Q03016 1276 aa1.63□□□□□ -2.15
PCF11YDR228C YET2Q04210 160 aa1.63□□□□□ -2.15
PCF11YDR228C MDM36Q06820 579 aa1.63□□□□□ -2.15
PCF11YDR228C HSP42Q12329 375 aa1.63□□□□□ -2.15
PCF11YDR228C SPO7P18410 259 aa1.62□□□□□ -2.15
PCF11YDR228C YIL029CP40538 142 aa1.62□□□□□ -2.15
PCF11YDR228C YFR057WP43625 151 aa1.62□□□□□ -2.15
PCF11YDR228C DLD2P46681 530 aaKnown RBP1.62□□□□□ -2.15
PCF11YDR228C PHB2P50085 310 aa1.62□□□□□ -2.15
PCF11YDR228C URH1Q04179 340 aa1.62□□□□□ -2.15
PCF11YDR228C PIN3Q06449 215 aa1.62□□□□□ -2.15
PCF11YDR228C VAM3Q12241 283 aa1.62□□□□□ -2.15
PCF11YDR228C RPL3P14126 387 aaKnown RBP1.61□□□□□ -2.15
PCF11YDR228C CLC1P17891 233 aa1.61□□□□□ -2.15
PCF11YDR228C YCL068CP25593 260 aa1.61□□□□□ -2.15
PCF11YDR228C CDC50P25656 391 aa1.61□□□□□ -2.15
PCF11YDR228C RRP4P38792 359 aaKnown RBP1.61□□□□□ -2.15
PCF11YDR228C COX14P39103 70 aa1.61□□□□□ -2.15
PCF11YDR228C TIM17P39515 158 aa1.61□□□□□ -2.15
PCF11YDR228C COS5P47187 383 aa1.61□□□□□ -2.15
PCF11YDR228C MRM2P53123 320 aa1.61□□□□□ -2.15
PCF11YDR228C CRH1P53301 507 aa1.61□□□□□ -2.15
PCF11YDR228C COS1P53822 381 aa1.61□□□□□ -2.15
PCF11YDR228C RTN1Q04947 295 aaKnown RBP1.61□□□□□ -2.15
PCF11YDR228C COS7Q07788 383 aa1.61□□□□□ -2.15
PCF11YDR228C ATG34Q12292 412 aa1.61□□□□□ -2.15
PCF11YDR228C RRI2Q12348 645 aa1.61□□□□□ -2.15
PCF11YDR228C MET17P06106 444 aa1.6□□□□□ -2.15
PCF11YDR228C CKA1P15790 372 aa1.6□□□□□ -2.15
PCF11YDR228C BEM1P29366 551 aa1.6□□□□□ -2.15
PCF11YDR228C CYS4P32582 507 aaKnown RBP1.6□□□□□ -2.15
PCF11YDR228C EGT2P42835 1041 aa1.6□□□□□ -2.15
PCF11YDR228C YPS5P53057 165 aa1.6□□□□□ -2.15
PCF11YDR228C MKC7P53379 596 aa1.6□□□□□ -2.15
PCF11YDR228C LIP2Q06005 328 aa1.6□□□□□ -2.15
PCF11YDR228C SNT309Q06091 175 aaPredicted RBP1.6□□□□□ -2.15
PCF11YDR228C YOL159C-AQ3E769 90 aa1.6□□□□□ -2.15
PCF11YDR228C CLN1P20437 546 aa1.6□□□□□ -2.15
PCF11YDR228C IES6P32617 166 aa1.6□□□□□ -2.15
PCF11YDR228C DTR1P38125 572 aa1.6□□□□□ -2.15
PCF11YDR228C YHK8P38776 514 aa1.6□□□□□ -2.15
PCF11YDR228C FLC3P53121 802 aa1.6□□□□□ -2.15
PCF11YDR228C MNP1P53163 194 aaPredicted RBP1.6□□□□□ -2.15
PCF11YDR228C CCE1Q03702 353 aa1.6□□□□□ -2.15
PCF11YDR228C RRP45Q05636 305 aaKnown RBP1.6□□□□□ -2.15
PCF11YDR228C YPR091CQ06833 770 aa1.6□□□□□ -2.15
PCF11YDR228C MRP7P12687 371 aa1.59□□□□□ -2.15
PCF11YDR228C DPH2P32461 534 aa1.59□□□□□ -2.15
PCF11YDR228C DPH5P32469 300 aaPredicted RBP1.59□□□□□ -2.15
PCF11YDR228C TPS1Q00764 495 aaKnown RBP1.59□□□□□ -2.15
PCF11YDR228C TDA1Q03533 586 aa1.59□□□□□ -2.15
PCF11YDR228C RRP9Q06506 573 aaKnown RBP1.59□□□□□ -2.15
PCF11YDR228C BUG1Q12191 341 aa1.59□□□□□ -2.15
PCF11YDR228C YPS3Q12303 508 aa1.59□□□□□ -2.15
PCF11YDR228C PGA3Q12746 312 aaKnown RBP1.59□□□□□ -2.15
PCF11YDR228C AIM24P47127 394 aa1.58□□□□□ -2.16
PCF11YDR228C ATP22P50273 684 aaPredicted RBP1.58□□□□□ -2.16
PCF11YDR228C YMR102CQ03177 834 aa1.58□□□□□ -2.16
PCF11YDR228C MFG1Q07684 458 aa1.58□□□□□ -2.16
PCF11YDR228C SMC5Q08204 1093 aa1.58□□□□□ -2.16
PCF11YDR228C RFM1Q12192 310 aa1.58□□□□□ -2.16
PCF11YDR228C RAX2Q12465 1220 aa1.58□□□□□ -2.16
PCF11YDR228C EXG1P23776 448 aaKnown RBP1.58□□□□□ -2.16
PCF11YDR228C MRPL27P36526 146 aaPredicted RBP1.58□□□□□ -2.16
PCF11YDR228C GPI18P38211 433 aa1.58□□□□□ -2.16
PCF11YDR228C YPS6P40583 537 aa1.58□□□□□ -2.16
PCF11YDR228C PRM7Q12459 698 aa1.58□□□□□ -2.16
PCF11YDR228C NAG1Q8TGN9 163 aa1.58□□□□□ -2.16
PCF11YDR228C ISN1Q99312 450 aa1.58□□□□□ -2.16
PCF11YDR228C CAP2P13517 287 aa1.57□□□□□ -2.16
PCF11YDR228C ERG3P32353 365 aa1.57□□□□□ -2.16
PCF11YDR228C YME2P32843 850 aa1.57□□□□□ -2.16
PCF11YDR228C ECT1P33412 323 aa1.57□□□□□ -2.16
PCF11YDR228C SAS3P34218 831 aa1.57□□□□□ -2.16
PCF11YDR228C RRN10P38204 145 aa1.57□□□□□ -2.16
PCF11YDR228C LCB3P47013 409 aa1.57□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 33.4 ms