RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 CUX1P39880 1505 aa5.13□□□□□ -1.59
PTCD3-218ENST00000493430 AKAP8O43823 692 aaKnown RBP5.12□□□□□ -1.59
PTCD3-218ENST00000493430 SPIRE1Q08AE8 756 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 SLFN13Q68D06 897 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 ANKS3Q6ZW76 656 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 OTOP3Q7RTS5 596 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 CELF2-AS1Q8N7Q2 184 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 HNRNPLLQ8WVV9 542 aaKnown RBP5.12□□□□□ -1.59
PTCD3-218ENST00000493430 CDK5RAP1Q96SZ6 601 aaKnown RBP5.12□□□□□ -1.59
PTCD3-218ENST00000493430 DLL4Q9NR61 685 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 RBPJLQ9UBG7 517 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 PPARGC1AQ9UBK2 798 aaKnown RBP5.12□□□□□ -1.59
PTCD3-218ENST00000493430 SYNJ1O43426 1573 aa5.12□□□□□ -1.59
PTCD3-218ENST00000493430 GPR42O15529 346 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 FBXO21O94952 628 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 FSHBP01225 129 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 CHGBP05060 677 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 DNAJA1P31689 397 aaKnown RBP5.11□□□□□ -1.59
PTCD3-218ENST00000493430 TUSC3Q13454 348 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 ICAM4Q14773 271 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 DDR2Q16832 855 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 KIZQ2M2Z5 673 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 LBX2Q6XYB7 198 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 PROSER1Q86XN7 944 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 DTX3Q8N9I9 347 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 SH3RF3Q8TEJ3 882 aaPredicted RBP5.11□□□□□ -1.59
PTCD3-218ENST00000493430 ZFYVE21Q9BQ24 234 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 TINF2Q9BSI4 451 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 AARSD1Q9BTE6 412 aaKnown RBP5.11□□□□□ -1.59
PTCD3-218ENST00000493430 KLC2Q9H0B6 622 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 DEF6Q9H4E7 631 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 ADAM29Q9UKF5 820 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 RAD54L2Q9Y4B4 1467 aa5.11□□□□□ -1.59
PTCD3-218ENST00000493430 PRODHO43272 600 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 KLHL18O94889 574 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 CKMP06732 381 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 ENO2P09104 434 aaPredicted RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 FGFR1P11362 822 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 GNAT1P11488 350 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 PABPC1P11940 636 aaKnown RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 COL6A1P12109 1028 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 COL6A2P12110 1019 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 FAHP16930 419 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 GRK2P25098 689 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 GRK3P35626 688 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 SMAD2Q15796 467 aaKnown RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 PAN2Q504Q3 1202 aaKnown RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 PHF19Q5T6S3 580 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 KCNT2Q6UVM3 1135 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 NSMFQ6X4W1 530 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 SPRED1Q7Z699 444 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 RBM12BQ8IXT5 1001 aaKnown RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 NUDT10Q8NFP7 164 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 DNERQ8NFT8 737 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 UHMK1Q8TAS1 419 aaKnown RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 NUDT11Q96G61 164 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 KCNJ15Q99712 375 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 PDGFDQ9GZP0 370 aaPredicted RBP5.1□□□□□ -1.59
PTCD3-218ENST00000493430 CD248Q9HCU0 757 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 SRRDQ9UH36 339 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 BIVM-ERCC5R4GMW8 1640 aa5.1□□□□□ -1.59
PTCD3-218ENST00000493430 POLA1P09884 1462 aaPredicted RBP5.09□□□□□ -1.59
PTCD3-218ENST00000493430 FGD5Q6ZNL6 1462 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 KLF4O43474 513 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 KNG1P01042 644 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 GPR85P60893 370 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 CDSNQ15517 529 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 Q6ZUG5 572 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 DPH6Q7L8W6 267 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.09□□□□□ -1.59
PTCD3-218ENST00000493430 IFNL3Q8IZI9 196 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 SLC43A3Q8NBI5 491 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 SLC16A11Q8NCK7 471 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 ST13P5Q8NFI4 369 aaPredicted RBP5.09□□□□□ -1.59
PTCD3-218ENST00000493430 OSBP2Q969R2 916 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 PTPN18Q99952 460 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 ARHGAP20Q9P2F6 1191 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 DSEQ9UL01 958 aa5.09□□□□□ -1.59
PTCD3-218ENST00000493430 ABCA5Q8WWZ7 1642 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 PATE3B3GLJ2 98 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 FAM47E-STBD1D6RA91 191 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 NKRFO15226 690 aaKnown RBP eCLIP5.08□□□□□ -1.6
PTCD3-218ENST00000493430 LTFP02788 710 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 GLRBP48167 497 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 PFKPQ01813 784 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 IFRD2Q12894 506 aaPredicted RBP5.08□□□□□ -1.6
PTCD3-218ENST00000493430 NTRK3Q16288 839 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 SKIDA1Q1XH10 827 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 HABP4Q5JVS0 413 aaKnown RBP5.08□□□□□ -1.6
PTCD3-218ENST00000493430 STYK1Q6J9G0 422 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 ZNF585AQ6P3V2 769 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 RALYLQ86SE5 291 aaKnown RBP5.08□□□□□ -1.6
PTCD3-218ENST00000493430 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.08□□□□□ -1.61e-15■■□□□ 12.9
PTCD3-218ENST00000493430 GMLQ99445 158 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 SEMA4AQ9H3S1 761 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 SEC61A2Q9H9S3 476 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 ARHGEF4Q9NR80 690 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 ZFP69BQ9UJL9 534 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 TCAF1Q9Y4C2 921 aa5.08□□□□□ -1.6
PTCD3-218ENST00000493430 TRAV20A0A0B4J274 112 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms