RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
PTCD3-218ENST00000493430 CHIC1Q5VXU3 224 aa21.34■■□□□ 1.01
PTCD3-218ENST00000493430 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
PTCD3-218ENST00000493430 PHF23Q9BUL5 403 aaPredicted RBP18.78■□□□□ 0.6
PTCD3-218ENST00000493430 FOXD1Q16676 465 aa17.66■□□□□ 0.42
PTCD3-218ENST00000493430 PLPPR3Q6T4P5 718 aa17.16■□□□□ 0.34
PTCD3-218ENST00000493430 PPP6R1Q9UPN7 881 aa16.65■□□□□ 0.26
PTCD3-218ENST00000493430 ADRA2BP18089 450 aa16.61■□□□□ 0.25
PTCD3-218ENST00000493430 PIAS4Q8N2W9 510 aaPredicted RBP16.56■□□□□ 0.24
PTCD3-218ENST00000493430 MSH5O43196 834 aa16.49■□□□□ 0.23
PTCD3-218ENST00000493430 POTEDQ86YR6 584 aa15.75■□□□□ 0.11
PTCD3-218ENST00000493430 SCAF1Q9H7N4 1312 aaKnown RBP15.27■□□□□ 0.04
PTCD3-218ENST00000493430 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
PTCD3-218ENST00000493430 DMRT2Q9Y5R5 561 aa15.08■□□□□ 0
PTCD3-218ENST00000493430 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
PTCD3-218ENST00000493430 CNKSR2Q8WXI2 1034 aa14.74□□□□□ -0.05
PTCD3-218ENST00000493430 HOXD11P31277 338 aaPredicted RBP14.6□□□□□ -0.07
PTCD3-218ENST00000493430 NCBP3Q53F19 620 aaKnown RBP14.57□□□□□ -0.08
PTCD3-218ENST00000493430 RNF216Q9NWF9 866 aaPredicted RBP14.56□□□□□ -0.08
PTCD3-218ENST00000493430 DCAF8L1A6NGE4 600 aa14.48□□□□□ -0.09
PTCD3-218ENST00000493430 NPM3O75607 178 aaKnown RBP14.3□□□□□ -0.12
PTCD3-218ENST00000493430 KCNA4P22459 653 aa14.18□□□□□ -0.14
PTCD3-218ENST00000493430 DNAJC5BQ9UF47 199 aa14.09□□□□□ -0.15
PTCD3-218ENST00000493430 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
PTCD3-218ENST00000493430 CACNB1Q02641 598 aaPredicted RBP14.05□□□□□ -0.16
PTCD3-218ENST00000493430 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.187e-11■■□□□ 11.9
PTCD3-218ENST00000493430 C1QBPQ07021 282 aaKnown RBP13.9□□□□□ -0.18
PTCD3-218ENST00000493430 U3KPZ7 1027 aaPredicted RBP13.62□□□□□ -0.23
PTCD3-218ENST00000493430 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
PTCD3-218ENST00000493430 SLC4A1APQ9BWU0 796 aaKnown RBP13.45□□□□□ -0.26
PTCD3-218ENST00000493430 CAPN15O75808 1086 aa13.38□□□□□ -0.27
PTCD3-218ENST00000493430 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
PTCD3-218ENST00000493430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.36□□□□□ -0.27
PTCD3-218ENST00000493430 HNRNPUL2Q1KMD3 747 aaKnown RBP13.36□□□□□ -0.27
PTCD3-218ENST00000493430 APLP2Q06481 763 aa13.34□□□□□ -0.27
PTCD3-218ENST00000493430 SAMD1Q6SPF0 538 aaPredicted RBP13.28□□□□□ -0.28
PTCD3-218ENST00000493430 MYCNP04198 464 aaPredicted RBP13.24□□□□□ -0.29
PTCD3-218ENST00000493430 DSG3P32926 999 aa13.23□□□□□ -0.29
PTCD3-218ENST00000493430 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
PTCD3-218ENST00000493430 FOXD4L1Q9NU39 408 aa13.2□□□□□ -0.3
PTCD3-218ENST00000493430 ZNF219Q9P2Y4 722 aaPredicted RBP13.2□□□□□ -0.3
PTCD3-218ENST00000493430 ABCB7O75027 752 aa13.06□□□□□ -0.32
PTCD3-218ENST00000493430 ZBTB22O15209 634 aa13.02□□□□□ -0.33
PTCD3-218ENST00000493430 POLA2Q14181 598 aa12.9□□□□□ -0.34
PTCD3-218ENST00000493430 ATF5Q9Y2D1 282 aaPredicted RBP12.89□□□□□ -0.35
PTCD3-218ENST00000493430 ATXN8OSP0DMR3 200 aa12.81□□□□□ -0.36
PTCD3-218ENST00000493430 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
PTCD3-218ENST00000493430 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
PTCD3-218ENST00000493430 CSRNP3Q8WYN3 585 aa12.61□□□□□ -0.39
PTCD3-218ENST00000493430 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
PTCD3-218ENST00000493430 FBLN2P98095 1184 aa12.44□□□□□ -0.42
PTCD3-218ENST00000493430 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
PTCD3-218ENST00000493430 AKT1S1Q96B36 256 aa12.4□□□□□ -0.42
PTCD3-218ENST00000493430 POTEHQ6S545 545 aa12.39□□□□□ -0.43
PTCD3-218ENST00000493430 MKRN4PQ13434 485 aaPredicted RBP12.31□□□□□ -0.44
PTCD3-218ENST00000493430 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
PTCD3-218ENST00000493430 SPDYE2BA6NHP3 402 aa12.28□□□□□ -0.44
PTCD3-218ENST00000493430 SPDYE6P0CI01 402 aa12.28□□□□□ -0.44
PTCD3-218ENST00000493430 SPDYE2Q495Y8 402 aa12.28□□□□□ -0.44
PTCD3-218ENST00000493430 REM2Q8IYK8 340 aaPredicted RBP12.27□□□□□ -0.45
PTCD3-218ENST00000493430 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-218ENST00000493430 PITPNM1O00562 1244 aa12.12□□□□□ -0.47
PTCD3-218ENST00000493430 SSUH2Q9Y2M2 353 aa12.11□□□□□ -0.47
PTCD3-218ENST00000493430 PIP4P2Q8N4L2 257 aa12.03□□□□□ -0.48
PTCD3-218ENST00000493430 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
PTCD3-218ENST00000493430 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
PTCD3-218ENST00000493430 CLEC11AQ9Y240 323 aa11.99□□□□□ -0.49
PTCD3-218ENST00000493430 PABPN1Q86U42 306 aaKnown RBP eCLIP11.98□□□□□ -0.49
PTCD3-218ENST00000493430 SPDYE4A6NLX3 237 aa11.86□□□□□ -0.51
PTCD3-218ENST00000493430 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
PTCD3-218ENST00000493430 PRKAR2AP13861 404 aaKnown RBP11.82□□□□□ -0.52
PTCD3-218ENST00000493430 HAX1O00165 279 aa11.79□□□□□ -0.52
PTCD3-218ENST00000493430 STAG3Q9UJ98 1225 aa11.73□□□□□ -0.53
PTCD3-218ENST00000493430 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
PTCD3-218ENST00000493430 SP7Q8TDD2 431 aaPredicted RBP11.71□□□□□ -0.53
PTCD3-218ENST00000493430 EVX2Q03828 476 aa11.61□□□□□ -0.55
PTCD3-218ENST00000493430 C19orf67A6NJJ6 358 aa11.59□□□□□ -0.55
PTCD3-218ENST00000493430 FARP1Q9Y4F1 1045 aaPredicted RBP11.58□□□□□ -0.56
PTCD3-218ENST00000493430 PROM2Q8N271 834 aa11.57□□□□□ -0.56
PTCD3-218ENST00000493430 CREBZFQ9NS37 354 aa11.54□□□□□ -0.56
PTCD3-218ENST00000493430 CD44P16070 742 aaKnown RBP11.46□□□□□ -0.57
PTCD3-218ENST00000493430 FKBP8Q14318 412 aa11.44□□□□□ -0.58
PTCD3-218ENST00000493430 GABBR2O75899 941 aa11.39□□□□□ -0.59
PTCD3-218ENST00000493430 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
PTCD3-218ENST00000493430 MNX1P50219 401 aaPredicted RBP11.36□□□□□ -0.59
PTCD3-218ENST00000493430 ZRANB1Q9UGI0 708 aa11.34□□□□□ -0.59
PTCD3-218ENST00000493430 PLEKHG5O94827 1062 aa11.32□□□□□ -0.6
PTCD3-218ENST00000493430 CLCN6P51797 869 aa11.32□□□□□ -0.6
PTCD3-218ENST00000493430 MIER1Q8N108 512 aa11.32□□□□□ -0.6
PTCD3-218ENST00000493430 PAK3O75914 559 aaPredicted RBP11.31□□□□□ -0.6
PTCD3-218ENST00000493430 ZNF579Q8NAF0 562 aaKnown RBP11.29□□□□□ -0.6
PTCD3-218ENST00000493430 PLCD3Q8N3E9 789 aa11.25□□□□□ -0.61
PTCD3-218ENST00000493430 FBXO3Q9UK99 471 aa11.2□□□□□ -0.62
PTCD3-218ENST00000493430 PHF12Q96QT6 1004 aa11.17□□□□□ -0.62
PTCD3-218ENST00000493430 ZBTB47Q9UFB7 747 aaPredicted RBP11.17□□□□□ -0.62
PTCD3-218ENST00000493430 TSPYL2Q9H2G4 693 aaPredicted RBP11.16□□□□□ -0.62
PTCD3-218ENST00000493430 DCBLD2Q96PD2 775 aa11.15□□□□□ -0.62
PTCD3-218ENST00000493430 GALR2O43603 387 aaPredicted RBP11.12□□□□□ -0.63
PTCD3-218ENST00000493430 POTEIP0CG38 1075 aa11.11□□□□□ -0.63
PTCD3-218ENST00000493430 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms