RNA–Protein interactions for RNA: YKL172W

EBP2, Transcript of Required for 25S rRNA maturation and 60S ribosomal subunit assembly, yeast

Gene EBP2, Length 1,284 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EBP2	YKL172W	RIB5	P38145	238 aa		3.94	□□□□□ -1.78
EBP2	YKL172W	ACL4	Q03771	387 aa		3.94	□□□□□ -1.78
EBP2	YKL172W	DIS3	Q08162	1001 aa	Known RBP	3.94	□□□□□ -1.78
EBP2	YKL172W	RSA1	Q08932	381 aa		3.94	□□□□□ -1.78
EBP2	YKL172W	BUG1	Q12191	341 aa		3.94	□□□□□ -1.78
EBP2	YKL172W	SPO7	P18410	259 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	CLN1	P20437	546 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	ARO2	P28777	376 aa	Known RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	DEG1	P31115	442 aa	Known RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	SMY1	P32364	656 aa	Known RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	APE3	P37302	537 aa	Known RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	PCF11	P39081	626 aa	Predicted RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	FAA2	P39518	744 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	GOR1	P53839	350 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	RSN1	Q03516	953 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	PBA1	Q05778	276 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	DCS1	Q06151	350 aa		3.93	□□□□□ -1.78
EBP2	YKL172W	SKI7	Q08491	747 aa	Predicted RBP	3.93	□□□□□ -1.78
EBP2	YKL172W	CPR2	P23285	205 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	CPR4	P25334	318 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	CTR86	P25355	563 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	SOR1	P35497	357 aa	Known RBP	3.92	□□□□□ -1.78
EBP2	YKL172W	KKQ8	P36004	724 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	RRN10	P38204	145 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	SLM4	P38247	162 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	RRT2	P38332	387 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	SRP72	P38688	640 aa	Known RBP	3.92	□□□□□ -1.78
EBP2	YKL172W	YIL067C	P40514	678 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	OST1	P41543	476 aa	Known RBP	3.92	□□□□□ -1.78
EBP2	YKL172W	RPT4	P53549	437 aa	Known RBP	3.92	□□□□□ -1.78
EBP2	YKL172W	BET5	Q03630	159 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	SOR2	Q07786	357 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	ERV2	Q12284	196 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	ORT1	Q12375	292 aa		3.92	□□□□□ -1.78
EBP2	YKL172W	PXA2	P34230	853 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	NDT80	P38830	627 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	MTC6	P38849	526 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	YAL037W	P39728	267 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	WWM1	P43582	211 aa	Known RBP	3.91	□□□□□ -1.78
EBP2	YKL172W	PHO86	P46956	311 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	BTN2	P53286	410 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	GPI15	P53961	229 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	GIP3	Q03016	1276 aa		3.91	□□□□□ -1.78
EBP2	YKL172W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.9	□□□□□ -1.79	not detected
EBP2	YKL172W	YBR139W	P38109	508 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	ZIM17	P42844	174 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	SPG5	P42933	373 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	TOM22	P49334	152 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	ELP3	Q02908	557 aa	Known RBP	3.9	□□□□□ -1.79
EBP2	YKL172W	HER2	Q03557	464 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	PPM1	Q04081	328 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	MMR1	Q06324	491 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	TSR1	Q07381	788 aa	Known RBP	3.9	□□□□□ -1.79
EBP2	YKL172W	YOR387C	Q08910	206 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	VPS54	Q12071	889 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	RMD5	Q12508	421 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	SMC6	Q12749	1114 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	MTR10	Q99189	972 aa		3.9	□□□□□ -1.79
EBP2	YKL172W	HOM3	P10869	527 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	PTH1	P38876	190 aa	Known RBP	3.89	□□□□□ -1.79
EBP2	YKL172W	YGR210C	P42942	411 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	NCA3	P46955	337 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	TCB2	P48231	1178 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	YML6	P51998	286 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	TOF1	P53840	1238 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	CIK1	Q01649	594 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	AIM32	Q04689	311 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	YLR345W	Q06137	509 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	SNX3	Q08826	162 aa	Known RBP	3.89	□□□□□ -1.79
EBP2	YKL172W	RUP1	Q12242	671 aa		3.89	□□□□□ -1.79
EBP2	YKL172W	TY1B-A	O13527	1196 aa	Known RBP	3.88	□□□□□ -1.79
EBP2	YKL172W	ADE4	P04046	510 aa	Known RBP	3.88	□□□□□ -1.79
EBP2	YKL172W	SLY1	P22213	666 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	ERV1	P27882	189 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	ITR1	P30605	584 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	NIP1	P32497	812 aa	Known RBP	3.88	□□□□□ -1.79
EBP2	YKL172W	PRM5	P40476	318 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	REE1	P40893	198 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	OCA2	P53949	197 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	SMA2	Q04658	369 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	AEP3	Q12089	606 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	ATG34	Q12292	412 aa		3.88	□□□□□ -1.79
EBP2	YKL172W	ILV5	P06168	395 aa	Known RBP	3.87	□□□□□ -1.79
EBP2	YKL172W	NAM9	P27929	486 aa		3.87	□□□□□ -1.79
EBP2	YKL172W	MUD1	P32605	298 aa	Known RBP	3.87	□□□□□ -1.79
EBP2	YKL172W	VMA8	P32610	256 aa	Known RBP	3.87	□□□□□ -1.79
EBP2	YKL172W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.87	□□□□□ -1.79	not detected
EBP2	YKL172W	HXT11	P54862	567 aa		3.87	□□□□□ -1.79
EBP2	YKL172W	RAD57	P25301	460 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	LTV1	P34078	463 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	SWH1	P35845	1188 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	YBR056W	P38081	501 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	OLA1	P38219	394 aa	Known RBP	3.86	□□□□□ -1.79
EBP2	YKL172W	RRP4	P38792	359 aa	Known RBP	3.86	□□□□□ -1.79
EBP2	YKL172W	VHS2	P40463	436 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	YGR111W	P53265	400 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	RIP-Chip
EBP2	YKL172W	VPS9	P54787	451 aa		3.86	□□□□□ -1.79
EBP2	YKL172W	RPN9	Q04062	393 aa	Known RBP	3.86	□□□□□ -1.79
EBP2	YKL172W	URH1	Q04179	340 aa		3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 55.1 ms