RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	SPO7	P18410	259 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	GID7	P25569	745 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	OPY1	P38271	328 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	YMR124W	P39523	943 aa	Known RBP	4.62	□□□□□ -1.67
CAF16	YFL028C	XBP1	P40489	647 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	PCI8	P40512	444 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	SYG1	P40528	902 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	RPS0B	P46654	252 aa	Known RBP	4.62	□□□□□ -1.67
CAF16	YFL028C	LSB1	P53281	241 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	SEG1	Q04279	960 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	DCS1	Q06151	350 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	SPH1	Q06160	661 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	GSH2	Q08220	491 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	UAF30	Q08747	228 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	TY3A-G	Q12173	290 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	TY3A-I	Q99219	290 aa		4.62	□□□□□ -1.67
CAF16	YFL028C	ECM29	P38737	1868 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	TY1B-A	O13527	1196 aa	Known RBP	4.61	□□□□□ -1.67
CAF16	YFL028C	RIP1	P08067	215 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	VPS1	P21576	704 aa	Known RBP	4.61	□□□□□ -1.67
CAF16	YFL028C	BEM1	P29366	551 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	CUE2	P36075	443 aa	Known RBP	4.61	□□□□□ -1.67
CAF16	YFL028C	HEL1	P36113	551 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	YPK3	P38070	525 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	RTS2	P40962	232 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	PSA1	P41940	361 aa	Known RBP	4.61	□□□□□ -1.67
CAF16	YFL028C	FET5	P43561	622 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	YJL132W	P47014	750 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	ALT2	P52892	507 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	YNL181W	P53878	407 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	OCA2	P53949	197 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	GLO2	Q05584	274 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	ECI1	Q05871	280 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	APL5	Q08951	932 aa	Known RBP	4.61	□□□□□ -1.67
CAF16	YFL028C	AEP3	Q12089	606 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	NFI1	Q12216	726 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	RRD2	Q12461	358 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	YNL162W-A	Q3E7A8	72 aa		4.61	□□□□□ -1.67
CAF16	YFL028C	FKS1	P38631	1876 aa	Known RBP	4.6	□□□□□ -1.67
CAF16	YFL028C	SUC2	P00724	532 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	RPL1A	P0CX43	217 aa	Known RBP	4.6	□□□□□ -1.67
CAF16	YFL028C	RPL1B	P0CX44	217 aa	Known RBP	4.6	□□□□□ -1.67
CAF16	YFL028C	PPZ1	P26570	692 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	FUN19	P28003	413 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF16	YFL028C	CBP4	P37267	147 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	IAH1	P41734	238 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	ESBP6	P53918	673 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	EOS1	P53938	366 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	YPL107W	Q02873	248 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	PHO92	Q06390	306 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	CUE5	Q08412	411 aa	Known RBP	4.6	□□□□□ -1.67
CAF16	YFL028C	ATX2	Q12067	313 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	BSC1	Q12140	328 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	YPL150W	Q12152	901 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	HSP42	Q12329	375 aa		4.6	□□□□□ -1.67
CAF16	YFL028C	YER190C-B	P0CX94	160 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	YEL077W-A	P0CX95	160 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	YGR296C-B	P0CX96	160 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	YPL283W-B	P0CX97	160 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	YPR204C-A	P0CX98	160 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	RHB1	P25378	209 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	RPN2	P32565	945 aa	Known RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	REC114	P32841	428 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	PRX1	P34227	261 aa	Known RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	MCR1	P36060	302 aa	Known RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	FAD1	P38913	306 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	TFG2	P41896	400 aa	Predicted RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	ECM27	P47144	725 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	LIF1	P53150	421 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	RHO5	P53879	331 aa	Known RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	RPL15B	P54780	204 aa	Predicted RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	IVY1	Q04934	453 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	COQ11	Q05892	277 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	SMD2	Q06217	110 aa	Known RBP	4.59	□□□□□ -1.67
CAF16	YFL028C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CAF16	YFL028C	MED2	Q12124	431 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	NDJ1	Q12366	352 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	ERP3	Q12403	225 aa		4.59	□□□□□ -1.67
CAF16	YFL028C	RGT1	P32862	1170 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	SWH1	P35845	1188 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
CAF16	YFL028C	YGL039W	P53183	348 aa	Known RBP	4.58	□□□□□ -1.68
CAF16	YFL028C	GPI1	P53306	609 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	SMA1	Q02651	245 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	SLD5	Q03406	294 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	MSS11	Q03825	758 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	NRT1	Q08485	598 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	PGC1	Q08959	321 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	CEX1	Q12453	761 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	MTR10	Q99189	972 aa		4.58	□□□□□ -1.68
CAF16	YFL028C	LEU4	P06208	619 aa	Known RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	YML002W	P0CF17	737 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	AIM17	P23180	465 aa	Known RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	MGR1	P25573	417 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	SIN4	P32259	974 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	PRP21	P32524	280 aa	Predicted RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	GYP6	P32806	458 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	DBP7	P36120	742 aa	Known RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	ZTA1	P38230	334 aa	Known RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	GAA1	P39012	614 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 413.5 ms