RNA–Protein interactions for RNA: YDR254W

CHL4, Transcript of Outer kinetochore protein required for chromosome stability, yeast

Gene CHL4, Length 1,377 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL4	YDR254W	TAF12	Q03761	539 aa		5.67	□□□□□ -1.5
CHL4	YDR254W	PEX12	Q04370	399 aa		5.67	□□□□□ -1.5
CHL4	YDR254W	ESA1	Q08649	445 aa		5.67	□□□□□ -1.5
CHL4	YDR254W	GRE1	Q08969	168 aa		5.67	□□□□□ -1.5
CHL4	YDR254W	MSH5	Q12175	901 aa		5.67	□□□□□ -1.5
CHL4	YDR254W	TUB3	P09734	445 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	DSF1	P0CX08	502 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	YNR073C	P0CX09	502 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	VMA16	P23968	213 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	PRE4	P30657	266 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	PDB1	P32473	366 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	SRB5	P32585	307 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	GCG1	P32656	232 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	PRP18	P33411	251 aa	Predicted RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	CAF4	P36130	643 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	RFC5	P38251	354 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	OPY1	P38271	328 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	BMT2	P38278	337 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	ALP1	P38971	573 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	SAP1	P39955	897 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	IRC8	P47046	822 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	ASN2	P49090	572 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	RAI1	P53063	387 aa	Known RBP	5.66	□□□□□ -1.5
CHL4	YDR254W	YGL117W	P53133	265 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	STD1	Q02794	444 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	SPO77	Q06134	477 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	YFT2	Q06676	274 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	MRPL35	Q06678	367 aa		5.66	□□□□□ -1.5
CHL4	YDR254W	ERG11	P10614	530 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	PYC1	P11154	1178 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	ABF1	P14164	731 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	RPS5	P26783	225 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	KRE2	P27809	442 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	YPS1	P32329	569 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	RPD3	P32561	433 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	SPS19	P32573	292 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	FRE1	P32791	686 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	EMP70	P32802	667 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	TRM2	P33753	639 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	SNU114	P36048	1008 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	RPF2	P36160	344 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	LDB7	P38210	180 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	FIG1	P38224	298 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	AME1	P38313	324 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	OSH3	P38713	996 aa	Known RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	HXT9	P40885	567 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	CDC40	P40968	455 aa	Predicted RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	MRPL50	P53724	139 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	IPI3	P53877	555 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	HXT11	P54862	567 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	YDR541C	Q03049	344 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	SHS1	Q07657	551 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	DNL4	Q08387	944 aa	Predicted RBP	5.65	□□□□□ -1.51
CHL4	YDR254W	SGO1	Q08490	590 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	DAP1	Q12091	152 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	YLR108C	Q12259	485 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	RRD2	Q12461	358 aa		5.65	□□□□□ -1.51
CHL4	YDR254W	THO2	P53552	1597 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	MF(ALPHA)1	P01149	165 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	STE18	P18852	110 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	RBK1	P25332	333 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	IMG1	P25626	169 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	APL1	P27351	700 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	PMI40	P29952	429 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	PRE2	P30656	287 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	RIM1	P32445	135 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	UGP1	P32861	499 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	CSE1	P33307	960 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	SRP102	P36057	244 aa	Predicted RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	DBP7	P36120	742 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	RIB1	P38066	345 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	RFT1	P38206	574 aa	Predicted RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	YNG2	P38806	282 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	YHR210C	P38893	341 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	CIN5	P40917	295 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	YAR1	P46683	200 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	FMP33	P46998	180 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	APS3	P47064	194 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	RFX1	P48743	811 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	CTF19	Q02732	369 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	YMR209C	Q03648	457 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	SIZ1	Q04195	904 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	CDC123	Q05791	360 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	YPR147C	Q06522	304 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	YDL144C	Q07589	356 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	PAA1	Q12447	191 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	NOT5	Q12514	560 aa	Predicted RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	LSO2	Q3E772	92 aa	Known RBP	5.64	□□□□□ -1.51
CHL4	YDR254W	AI5_BETA	Q9ZZX0	354 aa		5.64	□□□□□ -1.51
CHL4	YDR254W	BUD4	P47136	1447 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	QCR2	P07257	368 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	YIM1	P28625	365 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	ECM21	P38167	1117 aa	Known RBP	5.63	□□□□□ -1.51
CHL4	YDR254W	FMO1	P38866	432 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	PFS1	P38872	237 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	PRP39	P39682	629 aa	Known RBP	5.63	□□□□□ -1.51
CHL4	YDR254W	GID8	P40208	455 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	MTR3	P48240	250 aa	Predicted RBP	5.63	□□□□□ -1.51
CHL4	YDR254W	YGR042W	P53227	271 aa		5.63	□□□□□ -1.51
CHL4	YDR254W	YGR127W	P53275	312 aa		5.63	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms