RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	C2orf27A	Q580R0	203 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	PRAMEF18	Q5VWM3	479 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	VASN	Q6EMK4	673 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	TTLL10	Q6ZVT0	673 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	ZC3H7A	Q8IWR0	971 aa	Known RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	CARF	Q8N187	725 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	LINC00482	Q8N8I6	264 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	ARRDC4	Q8NCT1	418 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	UHMK1	Q8TAS1	419 aa	Known RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	FBXW5	Q969U6	566 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	KCNC2	Q96PR1	638 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	GORASP1	Q9BQQ3	440 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	ZSWIM4	Q9H7M6	989 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	IPPK	Q9H8X2	491 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	CATSPERZ	Q9NTU4	200 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	NDOR1	Q9UHB4	597 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	TRAF6	Q9Y4K3	522 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	SLC27A2	O14975	620 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	RPL13	P26373	211 aa	Known RBP	4.17	□□□□□ -1.74
CD44-238	ENST00000534296	GJA4	P35212	333 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	THBS2	P35442	1172 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	SLURP1	P55000	103 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	ITGA1	P56199	1179 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	TUSC3	Q13454	348 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	CRY1	Q16526	586 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	VWA3B	Q502W6	1294 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	BORA	Q6PGQ7	559 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	TEPP	Q6URK8	271 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	KCTD1	Q719H9	257 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.17	□□□□□ -1.74
CD44-238	ENST00000534296	EXOC2	Q96KP1	924 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.17	□□□□□ -1.74
CD44-238	ENST00000534296	CDIP1	Q9H305	208 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	L2HGDH	Q9H9P8	463 aa		4.17	□□□□□ -1.74
CD44-238	ENST00000534296	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.17	□□□□□ -1.74
CD44-238	ENST00000534296	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.17	□□□□□ -1.74
CD44-238	ENST00000534296	FBXO21	O94952	628 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	CYP1A1	P04798	512 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-238	ENST00000534296	COL6A2	P12110	1019 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	KIAA2012	Q0VF49	1180 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	NFIX	Q14938	502 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	GPR19	Q15760	415 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	CR1L	Q2VPA4	569 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	FIGN	Q5HY92	759 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	FAM26F	Q5R3K3	315 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	NT5DC1	Q5TFE4	455 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	LILRA6	Q6PI73	481 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	FRMD5	Q7Z6J6	570 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	FAM26E	Q8N5C1	309 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	ZNF526	Q8TF50	670 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-238	ENST00000534296	NOX5	Q96PH1	765 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	SPATA25	Q9BR10	227 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	MRPL4	Q9BYD3	311 aa	Known RBP	4.16	□□□□□ -1.74
CD44-238	ENST00000534296	KRTAP4-9	Q9BYQ8	210 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	DLL4	Q9NR61	685 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	FTSJ1	Q9UET6	329 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	PCDHA8	Q9Y5H6	950 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296	PTCH2	Q9Y6C5	1203 aa		4.16	□□□□□ -1.74
CD44-238	ENST00000534296		B4E1Z4	1266 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	ARVCF	O00192	962 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	WNT9A	O14904	365 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	NPTXR	O95502	500 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	CRTAM	O95727	393 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	C6orf222	P0C671	652 aa	Predicted RBP	4.15	□□□□□ -1.75
CD44-238	ENST00000534296	SRGAP2C	P0DJJ0	459 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	HOXA5	P20719	270 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	GRIN1	Q05586	938 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	PAN2	Q504Q3	1202 aa	Known RBP	4.15	□□□□□ -1.75
CD44-238	ENST00000534296	FOXB2	Q5VYV0	432 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	C16orf59	Q7L2K0	433 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	FEZF2	Q8TBJ5	459 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	ADAMTS17	Q8TE56	1095 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	KISS1R	Q969F8	398 aa	Predicted RBP	4.15	□□□□□ -1.75
CD44-238	ENST00000534296	TEPSIN	Q96N21	525 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	RTEL1	Q9NZ71	1219 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	HSPBP1	Q9NZL4	362 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	CROT	Q9UKG9	612 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	ATP23	Q9Y6H3	246 aa		4.15	□□□□□ -1.75
CD44-238	ENST00000534296	ASXL2	Q76L83	1435 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296		A0A1B0GTL3	188 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	CCDC66	A2RUB6	948 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	HIP1R	O75146	1068 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	LRG1	P02750	347 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	CHGB	P05060	677 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	ENO2	P09104	434 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-238	ENST00000534296	FAH	P16930	419 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	SYN1	P17600	705 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	KRT15	P19012	456 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	FLT3	P36888	993 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	DNM2	P50570	870 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	EPHA5	P54756	1037 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	RGL3	Q3MIN7	710 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	TRIM61	Q5EBN2	209 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	HABP4	Q5JVS0	413 aa	Known RBP	4.14	□□□□□ -1.75
CD44-238	ENST00000534296	UBXN11	Q5T124	520 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	TMC5	Q6UXY8	1006 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	ARHGAP36	Q6ZRI8	547 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	PLEKHH3	Q7Z736	793 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	STK32C	Q86UX6	486 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms