RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 AEBP2Q6ZN18 517 aaPredicted RBP15.73■□□□□ 0.11
CD44-238ENST00000534296 CHIC1Q5VXU3 224 aa15.41■□□□□ 0.06
CD44-238ENST00000534296 SENP3Q9H4L4 574 aaPredicted RBP13.54□□□□□ -0.24
CD44-238ENST00000534296 PHF23Q9BUL5 403 aaPredicted RBP13.44□□□□□ -0.26
CD44-238ENST00000534296 PLPPR3Q6T4P5 718 aa12.55□□□□□ -0.4
CD44-238ENST00000534296 FOXD1Q16676 465 aa12.46□□□□□ -0.41
CD44-238ENST00000534296 ADRA2BP18089 450 aa11.91□□□□□ -0.5
CD44-238ENST00000534296 PPP6R1Q9UPN7 881 aa11.87□□□□□ -0.51
CD44-238ENST00000534296 PIAS4Q8N2W9 510 aaPredicted RBP11.82□□□□□ -0.52
CD44-238ENST00000534296 MSH5O43196 834 aa11.66□□□□□ -0.54
CD44-238ENST00000534296 POTEDQ86YR6 584 aa11.5□□□□□ -0.57
CD44-238ENST00000534296 SCAF1Q9H7N4 1312 aaKnown RBP11.09□□□□□ -0.63
CD44-238ENST00000534296 PPP4R3CPQ6ZMV5 832 aa11□□□□□ -0.65
CD44-238ENST00000534296 NCBP3Q53F19 620 aaKnown RBP10.81□□□□□ -0.68
CD44-238ENST00000534296 MAPK8IP2Q13387 824 aaPredicted RBP10.78□□□□□ -0.68
CD44-238ENST00000534296 CNKSR2Q8WXI2 1034 aa10.75□□□□□ -0.69
CD44-238ENST00000534296 DMRT2Q9Y5R5 561 aa10.75□□□□□ -0.69
CD44-238ENST00000534296 KCNA4P22459 653 aa10.62□□□□□ -0.71
CD44-238ENST00000534296 RNF216Q9NWF9 866 aaPredicted RBP10.54□□□□□ -0.72
CD44-238ENST00000534296 NPM3O75607 178 aaKnown RBP10.51□□□□□ -0.73
CD44-238ENST00000534296 HOXD11P31277 338 aaPredicted RBP10.48□□□□□ -0.73
CD44-238ENST00000534296 DCAF8L1A6NGE4 600 aa10.36□□□□□ -0.75
CD44-238ENST00000534296 DNAJC5BQ9UF47 199 aa10.24□□□□□ -0.77
CD44-238ENST00000534296 SLC4A1APQ9BWU0 796 aaKnown RBP10.18□□□□□ -0.78
CD44-238ENST00000534296 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.07□□□□□ -0.8
CD44-238ENST00000534296 CACNB1Q02641 598 aaPredicted RBP10.05□□□□□ -0.8
CD44-238ENST00000534296 SLC4A2P04920 1241 aa9.89□□□□□ -0.83
CD44-238ENST00000534296 RNF39Q9H2S5 420 aa9.89□□□□□ -0.83
CD44-238ENST00000534296 FOXD4L1Q9NU39 408 aa9.87□□□□□ -0.83
CD44-238ENST00000534296 C1QBPQ07021 282 aaKnown RBP9.84□□□□□ -0.83
CD44-238ENST00000534296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.83□□□□□ -0.84
CD44-238ENST00000534296 HNRNPUL2Q1KMD3 747 aaKnown RBP9.83□□□□□ -0.84
CD44-238ENST00000534296 MYCNP04198 464 aaPredicted RBP9.8□□□□□ -0.84
CD44-238ENST00000534296 APLP2Q06481 763 aa9.8□□□□□ -0.84
CD44-238ENST00000534296 U3KPZ7 1027 aaPredicted RBP9.8□□□□□ -0.84
CD44-238ENST00000534296 EHMT2Q96KQ7 1210 aa9.78□□□□□ -0.84
CD44-238ENST00000534296 SAMD1Q6SPF0 538 aaPredicted RBP9.75□□□□□ -0.85
CD44-238ENST00000534296 ZBTB22O15209 634 aa9.7□□□□□ -0.86
CD44-238ENST00000534296 CSRNP3Q8WYN3 585 aa9.63□□□□□ -0.87
CD44-238ENST00000534296 CAPN15O75808 1086 aa9.61□□□□□ -0.87
CD44-238ENST00000534296 ZNF219Q9P2Y4 722 aaPredicted RBP9.58□□□□□ -0.88
CD44-238ENST00000534296 ATXN8OSP0DMR3 200 aa9.57□□□□□ -0.88
CD44-238ENST00000534296 SPINK5Q9NQ38 1064 aaPredicted RBP9.53□□□□□ -0.88
CD44-238ENST00000534296 TRHP20396 242 aaPredicted RBP9.52□□□□□ -0.89
CD44-238ENST00000534296 DSG3P32926 999 aa9.38□□□□□ -0.91
CD44-238ENST00000534296 ATF5Q9Y2D1 282 aaPredicted RBP9.38□□□□□ -0.91
CD44-238ENST00000534296 ABCB7O75027 752 aa9.36□□□□□ -0.91
CD44-238ENST00000534296 POLA2Q14181 598 aa9.32□□□□□ -0.92
CD44-238ENST00000534296 ZBTB12Q9Y330 459 aaPredicted RBP9.3□□□□□ -0.92
CD44-238ENST00000534296 FBLN2P98095 1184 aa9.21□□□□□ -0.94
CD44-238ENST00000534296 RBM42Q9BTD8 480 aaKnown RBP9.08□□□□□ -0.96
CD44-238ENST00000534296 POTEHQ6S545 545 aa9□□□□□ -0.97
CD44-238ENST00000534296 OSCARQ8IYS5 282 aa9□□□□□ -0.97
CD44-238ENST00000534296 MKRN4PQ13434 485 aaPredicted RBP8.99□□□□□ -0.97
CD44-238ENST00000534296 SPDYE2BA6NHP3 402 aa8.97□□□□□ -0.97
CD44-238ENST00000534296 SPDYE6P0CI01 402 aa8.97□□□□□ -0.97
CD44-238ENST00000534296 SPDYE2Q495Y8 402 aa8.97□□□□□ -0.97
CD44-238ENST00000534296 ZNF692Q9BU19 519 aaPredicted RBP8.91□□□□□ -0.98
CD44-238ENST00000534296 AKT1S1Q96B36 256 aa8.9□□□□□ -0.98
CD44-238ENST00000534296 SPDYE4A6NLX3 237 aa8.87□□□□□ -0.99
CD44-238ENST00000534296 SSUH2Q9Y2M2 353 aa8.82□□□□□ -1
CD44-238ENST00000534296 FKBP8Q14318 412 aa8.79□□□□□ -1
CD44-238ENST00000534296 PABPN1Q86U42 306 aaKnown RBP eCLIP8.76□□□□□ -1.01
CD44-238ENST00000534296 REM2Q8IYK8 340 aaPredicted RBP8.75□□□□□ -1.01
CD44-238ENST00000534296 SPDYE1Q8NFV5 336 aaPredicted RBP8.74□□□□□ -1.01
CD44-238ENST00000534296 STAG3Q9UJ98 1225 aa8.7□□□□□ -1.02
CD44-238ENST00000534296 CLEC11AQ9Y240 323 aa8.68□□□□□ -1.02
CD44-238ENST00000534296 PITPNM1O00562 1244 aa8.66□□□□□ -1.02
CD44-238ENST00000534296 CHRDL2Q6WN34 429 aa8.65□□□□□ -1.02
CD44-238ENST00000534296 PROM2Q8N271 834 aa8.64□□□□□ -1.03
CD44-238ENST00000534296 FBXO3Q9UK99 471 aa8.61□□□□□ -1.03
CD44-238ENST00000534296 PRR29P0C7W0 189 aa8.6□□□□□ -1.03
CD44-238ENST00000534296 PLEKHG5O94827 1062 aa8.55□□□□□ -1.04
CD44-238ENST00000534296 FXR2P51116 673 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-238ENST00000534296 PIP4P2Q8N4L2 257 aa8.49□□□□□ -1.05
CD44-238ENST00000534296 PRKAR2AP13861 404 aaKnown RBP8.46□□□□□ -1.06
CD44-238ENST00000534296 PLCD3Q8N3E9 789 aa8.46□□□□□ -1.06
CD44-238ENST00000534296 MIER1Q8N108 512 aa8.44□□□□□ -1.06
CD44-238ENST00000534296 ZBTB47Q9UFB7 747 aaPredicted RBP8.44□□□□□ -1.06
CD44-238ENST00000534296 VASPP50552 380 aaPredicted RBP8.4□□□□□ -1.06
CD44-238ENST00000534296 CHADLQ6NUI6 762 aa8.39□□□□□ -1.07
CD44-238ENST00000534296 SP7Q8TDD2 431 aaPredicted RBP8.39□□□□□ -1.07
CD44-238ENST00000534296 NPM1P06748 294 aaKnown RBP eCLIP8.38□□□□□ -1.07
CD44-238ENST00000534296 CREBZFQ9NS37 354 aa8.38□□□□□ -1.07
CD44-238ENST00000534296 FARP1Q9Y4F1 1045 aaPredicted RBP8.36□□□□□ -1.07
CD44-238ENST00000534296 HAX1O00165 279 aa8.34□□□□□ -1.07
CD44-238ENST00000534296 KLHL34Q8N239 644 aa8.34□□□□□ -1.07
CD44-238ENST00000534296 PAK3O75914 559 aaPredicted RBP8.3□□□□□ -1.08
CD44-238ENST00000534296 MNX1P50219 401 aaPredicted RBP8.25□□□□□ -1.09
CD44-238ENST00000534296 CD44P16070 742 aaKnown RBP8.24□□□□□ -1.09
CD44-238ENST00000534296 SPOCK2Q92563 424 aa8.22□□□□□ -1.09
CD44-238ENST00000534296 FAM212AQ96EL1 285 aa8.22□□□□□ -1.09
CD44-238ENST00000534296 C19orf67A6NJJ6 358 aa8.21□□□□□ -1.1
CD44-238ENST00000534296 IFNLR1Q8IU57 520 aaPredicted RBP8.21□□□□□ -1.1
CD44-238ENST00000534296 ZRANB1Q9UGI0 708 aa8.18□□□□□ -1.1
CD44-238ENST00000534296 EVX2Q03828 476 aa8.16□□□□□ -1.1
CD44-238ENST00000534296 GSE1Q14687 1217 aa8.16□□□□□ -1.1
CD44-238ENST00000534296 TSPYL2Q9H2G4 693 aaPredicted RBP8.16□□□□□ -1.1
CD44-238ENST00000534296 NUBP1P53384 320 aa8.15□□□□□ -1.1
CD44-238ENST00000534296 CLCN6P51797 869 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms