RNA–Protein interactions for RNA: snR55

snR55, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR55, Length 98 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR55	snR55	ALG5	P40350	334 aa		0.97	□□□□□ -2.25
snR55	snR55	DLD2	P46681	530 aa	Known RBP	0.97	□□□□□ -2.25
snR55	snR55	IMD4	P50094	524 aa	Known RBP	0.97	□□□□□ -2.25
snR55	snR55	SOV1	Q04748	898 aa		0.97	□□□□□ -2.25
snR55	snR55	SSM4	P40318	1319 aa		0.96	□□□□□ -2.26
snR55	snR55	RPL19A	P0CX82	189 aa	Known RBP	0.96	□□□□□ -2.26
snR55	snR55	RPL19B	P0CX83	189 aa	Predicted RBP	0.96	□□□□□ -2.26
snR55	snR55	AAT2	P23542	418 aa	Known RBP	0.96	□□□□□ -2.26
snR55	snR55	PTK1	P36002	662 aa	Predicted RBP	0.96	□□□□□ -2.26
snR55	snR55	PRY2	P36110	329 aa		0.96	□□□□□ -2.26
snR55	snR55	LIP2	Q06005	328 aa		0.96	□□□□□ -2.26
snR55	snR55	RLM1	Q12224	676 aa		0.96	□□□□□ -2.26
snR55	snR55	YRM1	Q12340	786 aa		0.96	□□□□□ -2.26
snR55	snR55	SPO7	P18410	259 aa		0.95	□□□□□ -2.26
snR55	snR55	PRE8	P23639	250 aa		0.95	□□□□□ -2.26
snR55	snR55	SNT1	P25357	1226 aa		0.95	□□□□□ -2.26
snR55	snR55	REG2	P38232	338 aa		0.95	□□□□□ -2.26
snR55	snR55	DPH1	P40487	425 aa	Known RBP	0.95	□□□□□ -2.26
snR55	snR55	MDE1	P47095	244 aa		0.95	□□□□□ -2.26
snR55	snR55	UPF3	P48412	387 aa	Known RBP	0.95	□□□□□ -2.26
snR55	snR55	OCA1	P50946	238 aa	Predicted RBP	0.95	□□□□□ -2.26
snR55	snR55	YPS5	P53057	165 aa		0.95	□□□□□ -2.26
snR55	snR55	CAF130	P53280	1122 aa	Predicted RBP	0.95	□□□□□ -2.26
snR55	snR55	KTR5	P53966	522 aa	Predicted RBP	0.95	□□□□□ -2.26
snR55	snR55	SLF1	Q12034	447 aa	Known RBP	0.95	□□□□□ -2.26
snR55	snR55	RTP1	Q12751	981 aa		0.95	□□□□□ -2.26
snR55	snR55	TPS2	P31688	896 aa	Known RBP	0.94	□□□□□ -2.26
snR55	snR55	YME2	P32843	850 aa		0.94	□□□□□ -2.26
snR55	snR55	TCD2	P36101	447 aa	Known RBP	0.94	□□□□□ -2.26
snR55	snR55	SAP185	P40856	1058 aa		0.94	□□□□□ -2.26
snR55	snR55	YNR048W	P53740	393 aa		0.94	□□□□□ -2.26
snR55	snR55	NDE2	Q07500	545 aa		0.94	□□□□□ -2.26
snR55	snR55	JID1	Q12350	301 aa		0.94	□□□□□ -2.26
snR55	snR55	YPT6	Q99260	215 aa		0.94	□□□□□ -2.26
snR55	snR55	FUM1	P08417	488 aa	Known RBP	0.93	□□□□□ -2.26
snR55	snR55	PRD1	P25375	712 aa		0.93	□□□□□ -2.26
snR55	snR55	OXA1	P39952	402 aa		0.93	□□□□□ -2.26
snR55	snR55	SGN1	P40561	250 aa	Known RBP RIP-Chip data	0.93	□□□□□ -2.26	not detected
snR55	snR55	ADA2	Q02336	434 aa		0.93	□□□□□ -2.26
snR55	snR55	NGL3	Q03210	505 aa		0.93	□□□□□ -2.26
snR55	snR55	YPR195C	Q06594	109 aa		0.93	□□□□□ -2.26
snR55	snR55	TEF1	P02994	458 aa	Known RBP	0.92	□□□□□ -2.26
snR55	snR55	NAM2	P11325	894 aa		0.92	□□□□□ -2.26
snR55	snR55	PEP3	P27801	918 aa		0.92	□□□□□ -2.26
snR55	snR55	ECM25	P32525	599 aa		0.92	□□□□□ -2.26
snR55	snR55	CYM1	P32898	989 aa		0.92	□□□□□ -2.26
snR55	snR55	MRPL27	P36526	146 aa	Predicted RBP	0.92	□□□□□ -2.26
snR55	snR55	CBP4	P37267	147 aa		0.92	□□□□□ -2.26
snR55	snR55	OM14	P38325	134 aa		0.92	□□□□□ -2.26
snR55	snR55	VID30	P53076	958 aa		0.92	□□□□□ -2.26
snR55	snR55	YGR021W	P53212	290 aa		0.92	□□□□□ -2.26
snR55	snR55	ARE2	P53629	642 aa	Known RBP	0.92	□□□□□ -2.26
snR55	snR55	FRE4	P53746	719 aa		0.92	□□□□□ -2.26
snR55	snR55	TPS1	Q00764	495 aa	Known RBP	0.92	□□□□□ -2.26
snR55	snR55	FIN1	Q03898	291 aa		0.92	□□□□□ -2.26
snR55	snR55	YEH1	Q07804	573 aa		0.92	□□□□□ -2.26
snR55	snR55	CTI6	Q08923	506 aa		0.92	□□□□□ -2.26
snR55	snR55	SMF3	Q12078	473 aa	Predicted RBP	0.92	□□□□□ -2.26
snR55	snR55	SKM1	Q12469	655 aa		0.92	□□□□□ -2.26
snR55	snR55	TY1B-A	O13527	1196 aa	Known RBP	0.91	□□□□□ -2.26
snR55	snR55	TOP1	P04786	769 aa		0.91	□□□□□ -2.26
snR55	snR55	ATP10	P18496	279 aa		0.91	□□□□□ -2.26
snR55	snR55	OLE1	P21147	510 aa	Known RBP	0.91	□□□□□ -2.26
snR55	snR55	RAD57	P25301	460 aa		0.91	□□□□□ -2.26
snR55	snR55	CHS3	P29465	1165 aa		0.91	□□□□□ -2.26
snR55	snR55	THI2	P38141	450 aa		0.91	□□□□□ -2.26
snR55	snR55	CCT2	P39076	527 aa	Known RBP	0.91	□□□□□ -2.26
snR55	snR55	KAP123	P40069	1113 aa	Known RBP	0.91	□□□□□ -2.26
snR55	snR55	JLP2	P40206	208 aa		0.91	□□□□□ -2.26
snR55	snR55	BIR1	P47134	954 aa		0.91	□□□□□ -2.26
snR55	snR55	BNS1	P50084	137 aa		0.91	□□□□□ -2.26
snR55	snR55	YGL262W	P53054	175 aa		0.91	□□□□□ -2.26
snR55	snR55	RPL31B	P0C2H9	113 aa	Known RBP	0.9	□□□□□ -2.27
snR55	snR55	AGA2	P32781	87 aa		0.9	□□□□□ -2.27
snR55	snR55	WBP1	P33767	430 aa	Known RBP	0.9	□□□□□ -2.27
snR55	snR55	SPO73	P40031	143 aa		0.9	□□□□□ -2.27
snR55	snR55	CPR7	P47103	393 aa		0.9	□□□□□ -2.27
snR55	snR55	YIP5	P53108	310 aa		0.9	□□□□□ -2.27
snR55	snR55	YGL108C	P53139	140 aa		0.9	□□□□□ -2.27
snR55	snR55	RPN14	P53196	417 aa		0.9	□□□□□ -2.27
snR55	snR55	MTQ1	P53944	314 aa		0.9	□□□□□ -2.27
snR55	snR55	YET2	Q04210	160 aa		0.9	□□□□□ -2.27
snR55	snR55	HRT1	Q08273	121 aa		0.9	□□□□□ -2.27
snR55	snR55	YDR061W	Q12298	539 aa		0.9	□□□□□ -2.27
snR55	snR55	MSI1	P13712	422 aa		0.89	□□□□□ -2.27
snR55	snR55	RPI1	P23250	407 aa	Known RBP	0.89	□□□□□ -2.27
snR55	snR55	CDC50	P25656	391 aa		0.89	□□□□□ -2.27
snR55	snR55	ZUO1	P32527	433 aa	Known RBP	0.89	□□□□□ -2.27
snR55	snR55	YBL029W	P38201	376 aa		0.89	□□□□□ -2.27
snR55	snR55	GPI18	P38211	433 aa		0.89	□□□□□ -2.27
snR55	snR55	PFF1	P38244	976 aa		0.89	□□□□□ -2.27
snR55	snR55	STP2	P38704	541 aa		0.89	□□□□□ -2.27
snR55	snR55	SEC9	P40357	651 aa		0.89	□□□□□ -2.27
snR55	snR55	YFL012W	P43580	148 aa		0.89	□□□□□ -2.27
snR55	snR55	ATG18	P43601	500 aa		0.89	□□□□□ -2.27
snR55	snR55	AZR1	P50080	613 aa		0.89	□□□□□ -2.27
snR55	snR55	RHO5	P53879	331 aa	Known RBP	0.89	□□□□□ -2.27
snR55	snR55	NCS2	P53923	493 aa	Predicted RBP	0.89	□□□□□ -2.27
snR55	snR55	NUP116	Q02630	1113 aa		0.89	□□□□□ -2.27
snR55	snR55	YDR387C	Q04162	555 aa		0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms