RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W PUT4P15380 627 aa3.23□□□□□ -1.89
UBP8YMR223W EST1P17214 699 aaPredicted RBP3.23□□□□□ -1.89
UBP8YMR223W MSP1P28737 362 aa3.23□□□□□ -1.89
UBP8YMR223W NTG1P31378 399 aa3.23□□□□□ -1.89
UBP8YMR223W MRP20P32387 263 aa3.23□□□□□ -1.89
UBP8YMR223W DPH5P32469 300 aaPredicted RBP3.23□□□□□ -1.89
UBP8YMR223W YEL043WP32618 956 aa3.23□□□□□ -1.89
UBP8YMR223W MRP4P32902 394 aa3.23□□□□□ -1.89
UBP8YMR223W RPC37P36121 282 aa3.23□□□□□ -1.89
UBP8YMR223W MRPL40P36534 297 aa3.23□□□□□ -1.89
UBP8YMR223W YSW1P38280 609 aa3.23□□□□□ -1.89
UBP8YMR223W UTP9P38882 575 aaKnown RBP3.23□□□□□ -1.89
UBP8YMR223W SPT8P38915 602 aa3.23□□□□□ -1.89
UBP8YMR223W SLZ1P40167 298 aa3.23□□□□□ -1.89
UBP8YMR223W ALG8P40351 577 aa3.23□□□□□ -1.89
UBP8YMR223W SSU1P41930 458 aa3.23□□□□□ -1.89
UBP8YMR223W OGG1P53397 376 aaPredicted RBP3.23□□□□□ -1.89
UBP8YMR223W JJJ1P53863 590 aa3.23□□□□□ -1.89
UBP8YMR223W PNG1Q02890 363 aa3.23□□□□□ -1.89
UBP8YMR223W SNZ1Q03148 297 aa3.23□□□□□ -1.89
UBP8YMR223W BNA5Q05979 453 aa3.23□□□□□ -1.89
UBP8YMR223W KAP95Q06142 861 aaKnown RBP3.23□□□□□ -1.89
UBP8YMR223W ECM30Q06673 1274 aa3.23□□□□□ -1.89
UBP8YMR223W ENT4Q07872 247 aa3.23□□□□□ -1.89
UBP8YMR223W CTI6Q08923 506 aa3.23□□□□□ -1.89
UBP8YMR223W RTC5Q12108 567 aaKnown RBP3.23□□□□□ -1.89
UBP8YMR223W HUA2Q12134 243 aa3.23□□□□□ -1.89
UBP8YMR223W RPN5Q12250 445 aaKnown RBP3.23□□□□□ -1.89
UBP8YMR223W ADF1Q2V2Q1 113 aa3.23□□□□□ -1.89
UBP8YMR223W YER078W-AQ3E7A2 54 aa3.23□□□□□ -1.89
UBP8YMR223W YRF1-4O13559 1382 aa3.23□□□□□ -1.89
UBP8YMR223W LPD1P09624 499 aaKnown RBP3.22□□□□□ -1.89
UBP8YMR223W CDC24P11433 854 aaPredicted RBP3.22□□□□□ -1.89
UBP8YMR223W ARO3P14843 370 aaKnown RBP3.22□□□□□ -1.89
UBP8YMR223W MDH1P17505 334 aaKnown RBP RIP-Chip data3.22□□□□□ -1.89not detected
UBP8YMR223W PUT3P25502 979 aaPredicted RBP3.22□□□□□ -1.89
UBP8YMR223W PEP3P27801 918 aa3.22□□□□□ -1.89
UBP8YMR223W MSN2P33748 704 aa3.22□□□□□ -1.89
UBP8YMR223W MTR2P34232 184 aaKnown RBP3.22□□□□□ -1.89
UBP8YMR223W SKI2P35207 1287 aaKnown RBP RIP-Chip data3.22□□□□□ -1.89not detected
UBP8YMR223W SMF1P38925 575 aa3.22□□□□□ -1.89
UBP8YMR223W SHO1P40073 367 aa3.22□□□□□ -1.89
UBP8YMR223W MET18P40469 1032 aa3.22□□□□□ -1.89
UBP8YMR223W BUD27P43573 796 aaKnown RBP RIP-Chip data3.22□□□□□ -1.89not detected
UBP8YMR223W INN1P53901 409 aa3.22□□□□□ -1.89
UBP8YMR223W RSM23Q01163 450 aa3.22□□□□□ -1.89
UBP8YMR223W ARX1Q03862 593 aaKnown RBP3.22□□□□□ -1.89
UBP8YMR223W DIB1Q06819 143 aaPredicted RBP3.22□□□□□ -1.89
UBP8YMR223W ARG80P07249 177 aa3.21□□□□□ -1.9
UBP8YMR223W CAR2P07991 424 aaKnown RBP3.21□□□□□ -1.9
UBP8YMR223W GAL7P08431 366 aa3.21□□□□□ -1.9
UBP8YMR223W PRB1P09232 635 aa3.21□□□□□ -1.9
UBP8YMR223W BUD5P25300 642 aaPredicted RBP3.21□□□□□ -1.9
UBP8YMR223W ADH7P25377 361 aa3.21□□□□□ -1.9
UBP8YMR223W YCR051WP25631 222 aa3.21□□□□□ -1.9
UBP8YMR223W HMX1P32339 317 aa3.21□□□□□ -1.9
UBP8YMR223W YME1P32795 747 aa3.21□□□□□ -1.9
UBP8YMR223W MMS4P38257 691 aa3.21□□□□□ -1.9
UBP8YMR223W VMA13P41807 478 aaKnown RBP3.21□□□□□ -1.9
UBP8YMR223W DIA3P52290 468 aa3.21□□□□□ -1.9
UBP8YMR223W HOP2P53187 214 aa3.21□□□□□ -1.9
UBP8YMR223W PDR16P53860 351 aaKnown RBP3.21□□□□□ -1.9
UBP8YMR223W RAD30Q04049 632 aa3.21□□□□□ -1.9
UBP8YMR223W ECM7Q06200 448 aa3.21□□□□□ -1.9
UBP8YMR223W NMD4Q12129 218 aa3.21□□□□□ -1.9
UBP8YMR223W PFK27Q12471 397 aaPredicted RBP3.21□□□□□ -1.9
UBP8YMR223W PEP5P12868 1029 aa3.2□□□□□ -1.9
UBP8YMR223W CBS1P14066 229 aa3.2□□□□□ -1.9
UBP8YMR223W CPR2P23285 205 aa3.2□□□□□ -1.9
UBP8YMR223W PHO84P25297 587 aaKnown RBP3.2□□□□□ -1.9
UBP8YMR223W OCA4P25366 362 aa3.2□□□□□ -1.9
UBP8YMR223W PHO91P27514 894 aa3.2□□□□□ -1.9
UBP8YMR223W MSN4P33749 630 aa3.2□□□□□ -1.9
UBP8YMR223W PAD1P33751 242 aaKnown RBP RIP-Chip data3.2□□□□□ -1.9not detected
UBP8YMR223W DAD2P36162 133 aa3.2□□□□□ -1.9
UBP8YMR223W NTC20P38302 140 aaPredicted RBP3.2□□□□□ -1.9
UBP8YMR223W YHR054CP38780 354 aa3.2□□□□□ -1.9
UBP8YMR223W YDR089WP38966 869 aa3.2□□□□□ -1.9
UBP8YMR223W YGR210CP42942 411 aa3.2□□□□□ -1.9
UBP8YMR223W AAD10P47182 288 aa3.2□□□□□ -1.9
UBP8YMR223W CUE3P53137 624 aaKnown RBP3.2□□□□□ -1.9
UBP8YMR223W YNL050CP53952 270 aa3.2□□□□□ -1.9
UBP8YMR223W RLI1Q03195 608 aaKnown RBP3.2□□□□□ -1.9
UBP8YMR223W MGR3Q04472 501 aa3.2□□□□□ -1.9
UBP8YMR223W ROY1Q04847 553 aa3.2□□□□□ -1.9
UBP8YMR223W YOR387CQ08910 206 aa3.2□□□□□ -1.9
UBP8YMR223W VPS54Q12071 889 aa3.2□□□□□ -1.9
UBP8YMR223W SEC39Q12745 709 aa3.2□□□□□ -1.9
UBP8YMR223W RPL1AP0CX43 217 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W RPL1BP0CX44 217 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W UNG1P12887 359 aa3.19□□□□□ -1.9
UBP8YMR223W CDC42P19073 191 aa3.19□□□□□ -1.9
UBP8YMR223W PRE8P23639 250 aa3.19□□□□□ -1.9
UBP8YMR223W YCR022CP25620 114 aa3.19□□□□□ -1.9
UBP8YMR223W FUN19P28003 413 aaPredicted RBP3.19□□□□□ -1.9
UBP8YMR223W DEG1P31115 442 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W SPR1P32603 445 aa3.19□□□□□ -1.9
UBP8YMR223W PRS1P32895 427 aaKnown RBP3.19□□□□□ -1.9
UBP8YMR223W SRB2P34162 210 aa3.19□□□□□ -1.9
UBP8YMR223W FLC2P39719 783 aa3.19□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms