RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	AFT2	Q08957	416 aa		4.71	□□□□□ -1.66
ROT1	YMR200W	INP53	Q12271	1107 aa		4.71	□□□□□ -1.66
ROT1	YMR200W	YOR012W	Q12351	137 aa		4.71	□□□□□ -1.66
ROT1	YMR200W	SRN2	Q99176	213 aa		4.71	□□□□□ -1.66
ROT1	YMR200W	PUT2	P07275	575 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	YMR085W	P0CF18	432 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	FUS3	P16892	353 aa	Known RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	MEK1	P24719	497 aa	Predicted RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	YMC1	P32331	307 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	MEI5	P32489	222 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	SPR1	P32603	445 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	SOF1	P33750	489 aa	Known RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	TAE1	P38340	232 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	ERG7	P38604	731 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	PET100	P38958	111 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	ELO1	P39540	310 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	YER085C	P40058	173 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	SHQ1	P40486	507 aa	Predicted RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	MSY1	P48527	492 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	RIB4	P50861	169 aa	Predicted RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	ROG1	P53118	685 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	TIM21	P53220	239 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	VOA1	P53262	265 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	DIP5	P53388	608 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	IST1	P53843	298 aa	Predicted RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	ADE16	P54113	591 aa	Known RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	GTO3	Q04806	366 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	YPR078C	Q06813	372 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	IZH3	Q07959	543 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	RRD2	Q12461	358 aa		4.7	□□□□□ -1.66
ROT1	YMR200W	IKI3	Q06706	1349 aa	Known RBP	4.7	□□□□□ -1.66
ROT1	YMR200W	ALG1	P16661	449 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	SRP54	P20424	541 aa	Known RBP	4.69	□□□□□ -1.66
ROT1	YMR200W	SAT4	P25333	603 aa	Known RBP	4.69	□□□□□ -1.66
ROT1	YMR200W	ELO2	P25358	347 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	ARO4	P32449	370 aa	Known RBP	4.69	□□□□□ -1.66
ROT1	YMR200W	ECM25	P32525	599 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	CDC5	P32562	705 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	SRB4	P32569	687 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	ELF1	P36053	145 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	YKR015C	P36111	568 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	NUP133	P36161	1157 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	RCY1	P39531	840 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	YMR147W	P40218	223 aa	Known RBP	4.69	□□□□□ -1.66
ROT1	YMR200W	BNA6	P43619	295 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	YGR117C	P53270	476 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	YNL146W	P53906	100 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	KTR6	P54070	446 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	FMP30	Q02883	468 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	RIM13	Q03792	727 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	COQ9	Q05779	260 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	RTT109	Q07794	436 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	ATG9	Q12142	997 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	FMP16	Q12497	93 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	DCP1	Q12517	231 aa	Predicted RBP	4.69	□□□□□ -1.66
ROT1	YMR200W	RTC1	Q08281	1341 aa		4.69	□□□□□ -1.66
ROT1	YMR200W	RPL24A	P04449	155 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	AAC1	P04710	309 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	SAR1	P20606	190 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	DAL81	P21657	970 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	CNE1	P27825	502 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	GAC1	P28006	793 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	PRO3	P32263	286 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	HES1	P35843	434 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	LHS1	P36016	881 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	SNU114	P36048	1008 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	RPF2	P36160	344 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	APL3	P38065	1025 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	YHB1	P39676	399 aa	Known RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	YER130C	P39959	443 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	ECM10	P39987	644 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	YRB2	P40517	327 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	YGL108C	P53139	140 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	APC4	Q04601	652 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	GPN3	Q06543	272 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	IPK1	Q06667	281 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	TEN1	Q07921	160 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	NRT1	Q08485	598 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	RKM1	Q08961	583 aa	Predicted RBP	4.68	□□□□□ -1.66
ROT1	YMR200W	YPL216W	Q08964	1102 aa		4.68	□□□□□ -1.66
ROT1	YMR200W	GPH1	P06738	902 aa	Known RBP	4.67	□□□□□ -1.66
ROT1	YMR200W	CDC21	P06785	304 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	YPK1	P12688	680 aa	Known RBP	4.67	□□□□□ -1.66
ROT1	YMR200W	MGR1	P25573	417 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	STV1	P37296	890 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	KAP104	P38217	918 aa	Known RBP	4.67	□□□□□ -1.66
ROT1	YMR200W	PCA1	P38360	1216 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	ATM1	P40416	690 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	YFR020W	P43600	232 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	YNL247W	P53852	767 aa	Known RBP	4.67	□□□□□ -1.66
ROT1	YMR200W	STD1	Q02794	444 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	RSN1	Q03516	953 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	YMR310C	Q04867	317 aa	Predicted RBP	4.67	□□□□□ -1.66
ROT1	YMR200W	MRPL35	Q06678	367 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	CYK3	Q07533	885 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	APC2	Q12440	853 aa		4.67	□□□□□ -1.66
ROT1	YMR200W	PEP5	P12868	1029 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	THR4	P16120	514 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	CDC23	P16522	626 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	STE4	P18851	423 aa		4.66	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms