RNA–Protein interactions for RNA: YKR040C

YKR040C, Transcript of Dubious open reading frame, yeastyeast

Gene YKR040C, Length 504 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YKR040CYKR040C YIL001WP40560 513 aa11.04□□□□□ -0.64
YKR040CYKR040C UPF3P48412 387 aaKnown RBP11.04□□□□□ -0.64
YKR040CYKR040C RAD17P48581 401 aa11.04□□□□□ -0.64
YKR040CYKR040C ERG13P54839 491 aaKnown RBP11.04□□□□□ -0.64
YKR040CYKR040C PEX25Q02969 394 aa11.04□□□□□ -0.64
YKR040CYKR040C FAR10Q06001 478 aa11.04□□□□□ -0.64
YKR040CYKR040C CYR1P08678 2026 aaKnown RBP11.04□□□□□ -0.64
YKR040CYKR040C RPS17AP02407 136 aaKnown RBP11.03□□□□□ -0.64
YKR040CYKR040C HOM3P10869 527 aa11.03□□□□□ -0.64
YKR040CYKR040C RPS17BP14127 136 aaKnown RBP11.03□□□□□ -0.64
YKR040CYKR040C NPR1P22211 790 aa11.03□□□□□ -0.64
YKR040CYKR040C ZIP1P31111 875 aa11.03□□□□□ -0.64
YKR040CYKR040C SSH4P32343 579 aa11.03□□□□□ -0.64
YKR040CYKR040C BNA4P38169 460 aa11.03□□□□□ -0.64
YKR040CYKR040C MTR3P48240 250 aaPredicted RBP11.03□□□□□ -0.64
YKR040CYKR040C GOR1P53839 350 aa11.03□□□□□ -0.64
YKR040CYKR040C MCA1Q08601 432 aa11.03□□□□□ -0.64
YKR040CYKR040C RRP36Q12481 300 aaPredicted RBP11.03□□□□□ -0.64
YKR040CYKR040C SLH1P53327 1967 aaKnown RBP11.03□□□□□ -0.64
YKR040CYKR040C PRI2P20457 528 aa11.02□□□□□ -0.65
YKR040CYKR040C VPS33P20795 691 aa11.02□□□□□ -0.65
YKR040CYKR040C MXR2P25566 168 aa11.02□□□□□ -0.65
YKR040CYKR040C LDB16P25587 256 aa11.02□□□□□ -0.65
YKR040CYKR040C SYP1P25623 870 aaKnown RBP11.02□□□□□ -0.65
YKR040CYKR040C RPS27AP35997 82 aaKnown RBP11.02□□□□□ -0.65
YKR040CYKR040C RPS27BP38711 82 aa11.02□□□□□ -0.65
YKR040CYKR040C CIN4P39110 191 aa11.02□□□□□ -0.65
YKR040CYKR040C AYR1P40471 297 aa11.02□□□□□ -0.65
YKR040CYKR040C SEC26P41810 973 aaKnown RBP11.02□□□□□ -0.65
YKR040CYKR040C CCT7P42943 550 aaKnown RBP11.02□□□□□ -0.65
YKR040CYKR040C MUP1P50276 574 aa11.02□□□□□ -0.65
YKR040CYKR040C YPL071CQ02864 156 aa11.02□□□□□ -0.65
YKR040CYKR040C MSC1Q03104 513 aa11.02□□□□□ -0.65
YKR040CYKR040C YML119WQ03208 357 aa11.02□□□□□ -0.65
YKR040CYKR040C NOB1Q08444 459 aaKnown RBP11.02□□□□□ -0.65
YKR040CYKR040C ATP4P05626 244 aa11.01□□□□□ -0.65
YKR040CYKR040C MNN2P38069 597 aa11.01□□□□□ -0.65
YKR040CYKR040C FRT2P39734 528 aa11.01□□□□□ -0.65
YKR040CYKR040C YIL152WP40455 235 aa11.01□□□□□ -0.65
YKR040CYKR040C MPS3P47069 682 aa11.01□□□□□ -0.65
YKR040CYKR040C JHD2P47156 728 aaPredicted RBP11.01□□□□□ -0.65
YKR040CYKR040C ELP4Q02884 456 aaKnown RBP11.01□□□□□ -0.65
YKR040CYKR040C RQC1Q05468 723 aaKnown RBP11.01□□□□□ -0.65
YKR040CYKR040C YLR413WQ06689 675 aa11.01□□□□□ -0.65
YKR040CYKR040C JLP1Q12358 412 aa11.01□□□□□ -0.65
YKR040CYKR040C RAS2P01120 322 aaKnown RBP11□□□□□ -0.65
YKR040CYKR040C SPB1P25582 841 aaPredicted RBP11□□□□□ -0.65
YKR040CYKR040C CMK1P27466 446 aaKnown RBP11□□□□□ -0.65
YKR040CYKR040C MKK2P32491 506 aa11□□□□□ -0.65
YKR040CYKR040C NIP1P32497 812 aaKnown RBP11□□□□□ -0.65
YKR040CYKR040C MBP1P39678 833 aa11□□□□□ -0.65
YKR040CYKR040C TIM54P47045 478 aa11□□□□□ -0.65
YKR040CYKR040C IMA1P53051 589 aa11□□□□□ -0.65
YKR040CYKR040C EFR3Q03653 782 aaKnown RBP11□□□□□ -0.65
YKR040CYKR040C FMN1Q03778 218 aa11□□□□□ -0.65
YKR040CYKR040C YET2Q04210 160 aa11□□□□□ -0.65
YKR040CYKR040C GAD1Q04792 585 aa11□□□□□ -0.65
YKR040CYKR040C VPS74Q06385 345 aa11□□□□□ -0.65
YKR040CYKR040C CDA1Q06702 301 aa11□□□□□ -0.65
YKR040CYKR040C YPL066WQ12194 479 aa11□□□□□ -0.65
YKR040CYKR040C FAS1P07149 2051 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C CDC26P14724 124 aa10.99□□□□□ -0.65
YKR040CYKR040C MSS116P15424 664 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C GFD2P25370 566 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C CAT2P32796 670 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C SIP2P34164 415 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C ERP5P38819 212 aa10.99□□□□□ -0.65
YKR040CYKR040C VPS41P38959 992 aa10.99□□□□□ -0.65
YKR040CYKR040C FMP52P40008 231 aa10.99□□□□□ -0.65
YKR040CYKR040C SUB1P54000 292 aaKnown RBP10.99□□□□□ -0.65
YKR040CYKR040C HSP42Q12329 375 aa10.99□□□□□ -0.65
YKR040CYKR040C YPR096CO13587 100 aa10.98□□□□□ -0.65
YKR040CYKR040C ARD1P07347 238 aaPredicted RBP10.98□□□□□ -0.65
YKR040CYKR040C MRP13P12686 339 aa10.98□□□□□ -0.65
YKR040CYKR040C PHO91P27514 894 aa10.98□□□□□ -0.65
YKR040CYKR040C YJU2P28320 278 aaPredicted RBP10.98□□□□□ -0.65
YKR040CYKR040C RAD14P28519 371 aa10.98□□□□□ -0.65
YKR040CYKR040C FAA1P30624 700 aaKnown RBP10.98□□□□□ -0.65
YKR040CYKR040C DOA1P36037 715 aa10.98□□□□□ -0.65
YKR040CYKR040C GLG1P36143 616 aa10.98□□□□□ -0.65
YKR040CYKR040C PSA1P41940 361 aaKnown RBP10.98□□□□□ -0.65
YKR040CYKR040C IKS1P47042 667 aa10.98□□□□□ -0.65
YKR040CYKR040C STE24P47154 453 aa10.98□□□□□ -0.65
YKR040CYKR040C REC102Q02721 264 aa10.98□□□□□ -0.65
YKR040CYKR040C VPS16Q03308 798 aa10.98□□□□□ -0.65
YKR040CYKR040C YHC1Q05900 231 aaKnown RBP10.98□□□□□ -0.65
YKR040CYKR040C ISR1Q06098 443 aaKnown RBP10.98□□□□□ -0.65
YKR040CYKR040C PUN1Q06991 263 aa10.98□□□□□ -0.65
YKR040CYKR040C COX1P00401 534 aa10.97□□□□□ -0.65
YKR040CYKR040C ALG7P07286 448 aa10.97□□□□□ -0.65
YKR040CYKR040C CBS2P14905 389 aa10.97□□□□□ -0.65
YKR040CYKR040C SSO1P32867 290 aa10.97□□□□□ -0.65
YKR040CYKR040C LST4P34239 828 aa10.97□□□□□ -0.65
YKR040CYKR040C HEK2P38199 381 aaKnown RBP RIP-Chip data10.97□□□□□ -0.65not detected
YKR040CYKR040C RFC3P38629 340 aa10.97□□□□□ -0.65
YKR040CYKR040C SNP1Q00916 300 aaPredicted RBP10.97□□□□□ -0.65
YKR040CYKR040C RPM2Q02773 1202 aa10.97□□□□□ -0.65
YKR040CYKR040C RIB2Q12362 591 aaKnown RBP10.97□□□□□ -0.65
YKR040CYKR040C NUM1Q00402 2748 aa10.97□□□□□ -0.65
YKR040CYKR040C YPT1P01123 206 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms