RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFA1	YKL028W	USV1	Q12132	391 aa		4.24	□□□□□ -1.73
TFA1	YKL028W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
TFA1	YKL028W	YOL107W	Q12239	342 aa		4.24	□□□□□ -1.73
TFA1	YKL028W	LAS17	Q12446	633 aa		4.24	□□□□□ -1.73
TFA1	YKL028W	DCP1	Q12517	231 aa	Predicted RBP	4.24	□□□□□ -1.73
TFA1	YKL028W	ADE4	P04046	510 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	SAR1	P20606	190 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	RHB1	P25378	209 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	GID7	P25569	745 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	HSP104	P31539	908 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	SUA5	P32579	426 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	DUG2	P38149	878 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	KAP104	P38217	918 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	TAE1	P38340	232 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	EFM2	P38347	419 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	ATM1	P40416	690 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	NMA2	P53204	395 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	YNL134C	P53912	376 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	PET117	Q02771	107 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	STD1	Q02794	444 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	YMR178W	Q03219	274 aa	Known RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	TRS23	Q03784	219 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	PLM2	Q04383	521 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	MDM30	Q05930	598 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	RPS10A	Q08745	105 aa	Predicted RBP	4.23	□□□□□ -1.73
TFA1	YKL028W	RAV1	P47104	1357 aa		4.23	□□□□□ -1.73
TFA1	YKL028W	JIP3	O13555	125 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	YPR089W	O13585	888 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	SCEI	P03882	235 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	ARG80	P07249	177 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	PEP4	P07267	405 aa	Known RBP	4.22	□□□□□ -1.73
TFA1	YKL028W	PEP5	P12868	1029 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	SEC63	P14906	663 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	CNA1	P23287	553 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	ERG1	P32476	496 aa	Known RBP	4.22	□□□□□ -1.73
TFA1	YKL028W	YKR015C	P36111	568 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	PIH1	P38768	344 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	SPC97	P38863	823 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	MSS2	P40990	351 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	YJL163C	P46996	555 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	TAX4	P47030	604 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	HOP2	P53187	214 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	YGR126W	P53274	230 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	ATG4	P53867	494 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	PGA2	P53903	129 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	KTR5	P53966	522 aa	Predicted RBP	4.22	□□□□□ -1.73
TFA1	YKL028W	ECM30	Q06673	1274 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	NSE1	Q07913	336 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	RUP1	Q12242	671 aa		4.22	□□□□□ -1.73
TFA1	YKL028W	NFT1	P0CE68	1218 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	MAS1	P10507	462 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	ATP10	P18496	279 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	HXT2	P23585	541 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	MGR1	P25573	417 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.73	not detected
TFA1	YKL028W	SHP1	P34223	423 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	MTR2	P34232	184 aa	Known RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	BMH2	P34730	273 aa	Known RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	SIP3	P38717	1229 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	ALP1	P38971	573 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RCY1	P39531	840 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RTR1	P40084	226 aa	Predicted RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	TFG2	P41896	400 aa	Predicted RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	SPG5	P42933	373 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RPS10B	P46784	105 aa	Known RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	YNL146W	P53906	100 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RSM23	Q01163	450 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	SRL4	Q03085	281 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	URC2	Q04411	772 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RRN11	Q04712	507 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	YMR310C	Q04867	317 aa	Predicted RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	SSQ1	Q05931	657 aa	Predicted RBP	4.21	□□□□□ -1.73
TFA1	YKL028W	ECM7	Q06200	448 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RDR1	Q08904	546 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	NCE102	Q12207	173 aa	RIP-Chip data	4.21	□□□□□ -1.73	not detected
TFA1	YKL028W	FMP16	Q12497	93 aa		4.21	□□□□□ -1.73
TFA1	YKL028W	RPL24A	P04449	155 aa	Known RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	ADE5,7	P07244	802 aa	Known RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	CDC23	P16522	626 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	RNR3	P21672	869 aa	Known RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	ADY2	P25613	283 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	YUR1	P26725	428 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	SPR1	P32603	445 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	YSC83	P32792	385 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	GMH1	P36125	273 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	RRN10	P38204	145 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	QDR3	P38227	689 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	SPP381	P38282	291 aa	Predicted RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	YHR045W	P38775	560 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	ANS1	P38832	159 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	YER085C	P40058	173 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	GAT2	P40209	560 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	CDC40	P40968	455 aa	Predicted RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	LOH1	P47055	219 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	MRK1	P50873	501 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	TIM21	P53220	239 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	AAT1	Q01802	451 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	MRPS17	Q03246	237 aa	Predicted RBP	4.21	□□□□□ -1.74
TFA1	YKL028W	PDR8	Q06149	701 aa		4.21	□□□□□ -1.74
TFA1	YKL028W	GIS3	Q12418	502 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 41.4 ms