RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C RRN11Q04712 507 aa3.33□□□□□ -1.88
RUB1YDR139C RRP45Q05636 305 aaKnown RBP3.33□□□□□ -1.88
RUB1YDR139C THP3Q12049 470 aaKnown RBP3.33□□□□□ -1.88
RUB1YDR139C RRG1Q12167 365 aaPredicted RBP3.33□□□□□ -1.88
RUB1YDR139C HIS4P00815 799 aaKnown RBP3.32□□□□□ -1.88
RUB1YDR139C CHS1P08004 1131 aa3.32□□□□□ -1.88
RUB1YDR139C SAM1P10659 382 aaKnown RBP3.32□□□□□ -1.88
RUB1YDR139C SAM2P19358 384 aaKnown RBP3.32□□□□□ -1.88
RUB1YDR139C RPI1P23250 407 aaKnown RBP3.32□□□□□ -1.88
RUB1YDR139C NTC20P38302 140 aaPredicted RBP3.32□□□□□ -1.88
RUB1YDR139C NOC2P39744 710 aaKnown RBP3.32□□□□□ -1.88
RUB1YDR139C YGL242CP53066 181 aa3.32□□□□□ -1.88
RUB1YDR139C YMR155WQ03795 547 aa3.32□□□□□ -1.88
RUB1YDR139C ESA1Q08649 445 aa3.32□□□□□ -1.88
RUB1YDR139C HSP42Q12329 375 aa3.32□□□□□ -1.88
RUB1YDR139C YRF1-4O13559 1382 aa3.32□□□□□ -1.88
RUB1YDR139C SRV2P17555 526 aaKnown RBP3.31□□□□□ -1.88
RUB1YDR139C BYE1P36106 594 aa3.31□□□□□ -1.88
RUB1YDR139C YHR054CP38780 354 aa3.31□□□□□ -1.88
RUB1YDR139C LSM5P40089 93 aaKnown RBP3.31□□□□□ -1.88
RUB1YDR139C YIF1P53845 314 aaKnown RBP3.31□□□□□ -1.88
RUB1YDR139C PKH2Q12236 1081 aaKnown RBP3.31□□□□□ -1.88
RUB1YDR139C RRP12Q12754 1228 aaKnown RBP3.31□□□□□ -1.88
RUB1YDR139C HHF1P02309 103 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C SPT15P13393 240 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C SEC63P14906 663 aa3.3□□□□□ -1.88
RUB1YDR139C TIP1P27654 210 aaPredicted RBP3.3□□□□□ -1.88
RUB1YDR139C DEG1P31115 442 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C YBL059WP34224 193 aa3.3□□□□□ -1.88
RUB1YDR139C MIX23P38162 196 aa3.3□□□□□ -1.88
RUB1YDR139C YIL067CP40514 678 aa3.3□□□□□ -1.88
RUB1YDR139C SAS2P40963 338 aa3.3□□□□□ -1.88
RUB1YDR139C SSU1P41930 458 aa3.3□□□□□ -1.88
RUB1YDR139C SPG5P42933 373 aa3.3□□□□□ -1.88
RUB1YDR139C LAM5P43560 674 aa3.3□□□□□ -1.88
RUB1YDR139C RPS0BP46654 252 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C COS5P47187 383 aa3.3□□□□□ -1.88
RUB1YDR139C YGL138CP53122 345 aa3.3□□□□□ -1.88
RUB1YDR139C GOR1P53839 350 aa3.3□□□□□ -1.88
RUB1YDR139C ARX1Q03862 593 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C HEL2Q05580 639 aaKnown RBP3.3□□□□□ -1.88
RUB1YDR139C COS7Q07788 383 aa3.3□□□□□ -1.88
RUB1YDR139C TIM18Q08749 192 aa3.3□□□□□ -1.88
RUB1YDR139C VAM3Q12241 283 aa3.3□□□□□ -1.88
RUB1YDR139C SPS22P25380 463 aa3.29□□□□□ -1.88
RUB1YDR139C YCR051WP25631 222 aa3.29□□□□□ -1.88
RUB1YDR139C KRE2P27809 442 aa3.29□□□□□ -1.88
RUB1YDR139C SIN4P32259 974 aa3.29□□□□□ -1.88
RUB1YDR139C YME2P32843 850 aa3.29□□□□□ -1.88
RUB1YDR139C PAD1P33751 242 aaKnown RBP RIP-Chip data3.29□□□□□ -1.88not detected
RUB1YDR139C YOX1P34161 385 aa3.29□□□□□ -1.88
RUB1YDR139C NDT80P38830 627 aa3.29□□□□□ -1.88
RUB1YDR139C MST28P39552 234 aa3.29□□□□□ -1.88
RUB1YDR139C OST1P41543 476 aaKnown RBP3.29□□□□□ -1.88
RUB1YDR139C YJR011CP47086 261 aaPredicted RBP3.29□□□□□ -1.88
RUB1YDR139C KAP120Q02932 1032 aa3.29□□□□□ -1.88
RUB1YDR139C PBA1Q05778 276 aa3.29□□□□□ -1.88
RUB1YDR139C SGT1Q08446 395 aa3.29□□□□□ -1.88
RUB1YDR139C YOR387CQ08910 206 aa3.29□□□□□ -1.88
RUB1YDR139C YPR022CQ12139 1133 aa3.29□□□□□ -1.88
RUB1YDR139C YLR108CQ12259 485 aa3.29□□□□□ -1.88
RUB1YDR139C ERV2Q12284 196 aa3.29□□□□□ -1.88
RUB1YDR139C ARG4P04076 463 aaPredicted RBP3.28□□□□□ -1.88
RUB1YDR139C CPR4P25334 318 aa3.28□□□□□ -1.88
RUB1YDR139C SNT1P25357 1226 aa3.28□□□□□ -1.88
RUB1YDR139C SDH3P33421 198 aa3.28□□□□□ -1.88
RUB1YDR139C PIM1P36775 1133 aa3.28□□□□□ -1.88
RUB1YDR139C RIB5P38145 238 aa3.28□□□□□ -1.88
RUB1YDR139C RFC3P38629 340 aa3.28□□□□□ -1.88
RUB1YDR139C LYS1P38998 373 aaRIP-Chip data3.28□□□□□ -1.88not detected
RUB1YDR139C WWM1P43582 211 aaKnown RBP3.28□□□□□ -1.88
RUB1YDR139C YGR250CP53316 781 aaKnown RBP3.28□□□□□ -1.88
RUB1YDR139C SKO1Q02100 647 aa3.28□□□□□ -1.88
RUB1YDR139C DON1Q05610 365 aa3.28□□□□□ -1.88
RUB1YDR139C REX4Q08237 289 aa3.28□□□□□ -1.88
RUB1YDR139C RAD61Q99359 647 aa3.28□□□□□ -1.88
RUB1YDR139C RHB1P25378 209 aa3.27□□□□□ -1.89
RUB1YDR139C ARO2P28777 376 aaKnown RBP3.27□□□□□ -1.89
RUB1YDR139C BEM1P29366 551 aa3.27□□□□□ -1.89
RUB1YDR139C HIR2P32480 875 aa3.27□□□□□ -1.89
RUB1YDR139C STB6P36085 766 aa3.27□□□□□ -1.89
RUB1YDR139C RFS1P38234 210 aaKnown RBP3.27□□□□□ -1.89
RUB1YDR139C SDS24P38314 527 aa3.27□□□□□ -1.89
RUB1YDR139C YNR048WP53740 393 aa3.27□□□□□ -1.89
RUB1YDR139C FRE4P53746 719 aa3.27□□□□□ -1.89
RUB1YDR139C ELP3Q02908 557 aaKnown RBP3.27□□□□□ -1.89
RUB1YDR139C MDM30Q05930 598 aa3.27□□□□□ -1.89
RUB1YDR139C RKM1Q08961 583 aaPredicted RBP3.27□□□□□ -1.89
RUB1YDR139C TEF1P02994 458 aaKnown RBP3.26□□□□□ -1.89
RUB1YDR139C SUP35P05453 685 aaKnown RBP3.26□□□□□ -1.89
RUB1YDR139C SWH1P35845 1188 aa3.26□□□□□ -1.89
RUB1YDR139C FAA2P39518 744 aa3.26□□□□□ -1.89
RUB1YDR139C YGR210CP42942 411 aa3.26□□□□□ -1.89
RUB1YDR139C NCA3P46955 337 aa3.26□□□□□ -1.89
RUB1YDR139C HMS2P47175 358 aa3.26□□□□□ -1.89
RUB1YDR139C BTN2P53286 410 aa3.26□□□□□ -1.89
RUB1YDR139C TOF1P53840 1238 aa3.26□□□□□ -1.89
RUB1YDR139C YMR181CQ03231 154 aa3.26□□□□□ -1.89
RUB1YDR139C ROY1Q04847 553 aa3.26□□□□□ -1.89
RUB1YDR139C TSR1Q07381 788 aaKnown RBP3.26□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms