RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	ABZ2	Q03266	374 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	DIC1	Q06143	298 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	PHO92	Q06390	306 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	IPK1	Q06667	281 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	SRN2	Q99176	213 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	HSP104	P31539	908 aa	Known RBP	4.18	□□□□□ -1.74
NPL4	YBR170C	SSE1	P32589	693 aa	Known RBP	4.18	□□□□□ -1.74
NPL4	YBR170C	UTR4	P32626	227 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	RAD24	P32641	659 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	CBP4	P37267	147 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	VRG4	P40107	337 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	MPS2	P53159	387 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	PRM1	P53835	661 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	EKI1	Q03764	534 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	FRE7	Q12333	620 aa		4.18	□□□□□ -1.74
NPL4	YBR170C	NFT1	P0CE68	1218 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	OM45	P16547	393 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	URE2	P23202	354 aa	Known RBP	4.17	□□□□□ -1.74
NPL4	YBR170C	FLO10	P36170	1169 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	YIF1	P53845	314 aa	Known RBP	4.17	□□□□□ -1.74
NPL4	YBR170C	ARP5	P53946	755 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	YDR387C	Q04162	555 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	RRB1	Q04225	511 aa	Known RBP	4.17	□□□□□ -1.74
NPL4	YBR170C	VPS20	Q04272	221 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	NSE1	Q07913	336 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	BUG1	Q12191	341 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	RUP1	Q12242	671 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	RKM5	Q12367	367 aa		4.17	□□□□□ -1.74
NPL4	YBR170C	SAG1	P20840	650 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	YSC83	P32792	385 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	MRPL40	P36534	297 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	PCF11	P39081	626 aa	Predicted RBP	4.16	□□□□□ -1.74
NPL4	YBR170C	FAU1	P40099	211 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	YPS6	P40583	537 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	TRS85	P46944	698 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	MSC3	Q05812	728 aa		4.16	□□□□□ -1.74
NPL4	YBR170C	GRR1	P24814	1151 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	SMY1	P32364	656 aa	Known RBP	4.15	□□□□□ -1.74
NPL4	YBR170C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.74	not detected
NPL4	YBR170C	QDR3	P38227	689 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	SPC97	P38863	823 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	VPS25	P47142	202 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	GPI1	P53306	609 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	DSL1	P53847	754 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	SLD5	Q03406	294 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	IVY1	Q04934	453 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	GSH2	Q08220	491 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	YLR112W	Q12130	139 aa		4.15	□□□□□ -1.74
NPL4	YBR170C	ERG11	P10614	530 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	RPI1	P23250	407 aa	Known RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	YCR007C	P25354	239 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	GID7	P25569	745 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	PHD1	P36093	366 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	KAP104	P38217	918 aa	Known RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	STP2	P38704	541 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	LIN1	P38852	340 aa	Predicted RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	YHR218W	P38899	603 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	RRP46	P53256	223 aa	Predicted RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	IDP3	P53982	420 aa	Known RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	TAF12	Q03761	539 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	MRPL1	Q04599	285 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	RLP24	Q07915	199 aa	Known RBP	4.15	□□□□□ -1.75
NPL4	YBR170C	OSW1	Q08692	278 aa		4.15	□□□□□ -1.75
NPL4	YBR170C	CBP2	P03874	630 aa	Predicted RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	BUB3	P26449	341 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	APE2	P32454	952 aa	Known RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	ECM25	P32525	599 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	CYS4	P32582	507 aa	Known RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	PTK1	P36002	662 aa	Predicted RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	SPP381	P38282	291 aa	Predicted RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	INM1	P38710	295 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	SSO2	P39926	295 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	MKT1	P40850	830 aa	Known RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	PAC11	P40960	533 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	GAT1	P43574	510 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
NPL4	YBR170C	GIP3	Q03016	1276 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	RSC9	Q03124	581 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	GLO2	Q05584	274 aa		4.14	□□□□□ -1.75
NPL4	YBR170C	SNT309	Q06091	175 aa	Predicted RBP	4.14	□□□□□ -1.75
NPL4	YBR170C	CDC21	P06785	304 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	CHS1	P08004	1131 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	PSO2	P30620	661 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	EBP2	P36049	427 aa	Known RBP	4.13	□□□□□ -1.75
NPL4	YBR170C	RTT107	P38850	1070 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	YPT11	P48559	417 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	YNL234W	P53857	426 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	YOR012W	Q12351	137 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	PFK27	Q12471	397 aa	Predicted RBP	4.13	□□□□□ -1.75
NPL4	YBR170C	ARP6	Q12509	438 aa		4.13	□□□□□ -1.75
NPL4	YBR170C	VPS63	O13549	108 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	GCD2	P12754	651 aa	Predicted RBP	4.12	□□□□□ -1.75
NPL4	YBR170C	MBR1	P23493	339 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	RAD57	P25301	460 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	SPC34	P36131	295 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	YBR139W	P38109	508 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	TOM71	P38825	639 aa	Known RBP	4.12	□□□□□ -1.75
NPL4	YBR170C	YHR177W	P38867	453 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	YAL037W	P39728	267 aa		4.12	□□□□□ -1.75
NPL4	YBR170C	BRO1	P48582	844 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 20.1 ms