RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 LIFRP42702 1097 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 ZNF200P98182 395 aaPredicted RBP18.78■□□□□ 0.6
SCLT1-204ENST00000503215 TRAF1Q13077 416 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 SEMA3FQ13275 785 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 GPNMBQ14956 572 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 SESTD1Q86VW0 696 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 SPATA33Q96N06 139 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 NKX2-4Q9H2Z4 354 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 GTF3C3Q9Y5Q9 886 aa18.78■□□□□ 0.6
SCLT1-204ENST00000503215 FRMPD4Q14CM0 1322 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 TET1Q8NFU7 2136 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 ZBBXA8MT70 800 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 HAS3O00219 553 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 MEIS2O14770 477 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 F2P00734 622 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 SMARCA1P28370 1054 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 MFSD10Q14728 455 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 KIAA0753Q2KHM9 967 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 ADCK5Q3MIX3 580 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 TMTC2Q8N394 836 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 RETREG2Q8NC44 543 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 WNT8BQ93098 351 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 NOD1Q9Y239 953 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 SLC12A7Q9Y666 1083 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 SLC4A7Q9Y6M7 1214 aa18.77■□□□□ 0.6
SCLT1-204ENST00000503215 TRIP12Q14669 1992 aaPredicted RBP18.76■□□□□ 0.59
SCLT1-204ENST00000503215 PITPNM1O00562 1244 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 GNAQP50148 359 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.76■□□□□ 0.59
SCLT1-204ENST00000503215 FANCBQ8NB91 859 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 LZTS2Q9BRK4 669 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 C16orf70Q9BSU1 422 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 MTIF3Q9H2K0 278 aaKnown RBP18.76■□□□□ 0.59
SCLT1-204ENST00000503215 PRDM12Q9H4Q4 367 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 GTF2IRD1Q9UHL9 959 aa18.76■□□□□ 0.59
SCLT1-204ENST00000503215 PPFIA4O75335 1185 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 TGFB3P10600 412 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 EXOSC10Q01780 885 aaKnown RBP18.75■□□□□ 0.59
SCLT1-204ENST00000503215 BFSP2Q13515 415 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 KCNV1Q6PIU1 500 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 TMTC3Q6ZXV5 915 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 MICU3Q86XE3 530 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 C7orf31Q8N865 590 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 USP38Q8NB14 1042 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 SMARCC2Q8TAQ2 1214 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 INPP4AQ96PE3 977 aaPredicted RBP18.75■□□□□ 0.59
SCLT1-204ENST00000503215 NEK1Q96PY6 1258 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 MLXIPQ9HAP2 919 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 SEC63Q9UGP8 760 aaKnown RBP18.75■□□□□ 0.59
SCLT1-204ENST00000503215 MSRAQ9UJ68 235 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 BRPF3Q9ULD4 1205 aa18.75■□□□□ 0.59
SCLT1-204ENST00000503215 SPATA31C2B4DYI2 1134 aa18.74■□□□□ 0.59
SCLT1-204ENST00000503215 CDC45O75419 566 aa18.74■□□□□ 0.59
SCLT1-204ENST00000503215 UBE2SQ16763 222 aa18.74■□□□□ 0.59
SCLT1-204ENST00000503215 TCTN1Q2MV58 587 aa18.74■□□□□ 0.59
SCLT1-204ENST00000503215 SGMS1Q86VZ5 419 aa18.74■□□□□ 0.59
SCLT1-204ENST00000503215 FTOQ9C0B1 505 aaKnown RBP eCLIP18.74■□□□□ 0.593e-8■□□□□ 9.8
SCLT1-204ENST00000503215 CHD7Q9P2D1 2997 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 PIK3CDO00329 1044 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 PFKMP08237 780 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 CALM1P0DP23 149 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 CALM2P0DP24 149 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 CALM3P0DP25 149 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 ATP2A2P16615 1042 aaKnown RBP18.73■□□□□ 0.59
SCLT1-204ENST00000503215 ICAM3P32942 547 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 ADGRE1Q14246 886 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 RAB30Q15771 203 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 TRIM71Q2Q1W2 868 aaKnown RBP18.73■□□□□ 0.59
SCLT1-204ENST00000503215 CYFIP1Q7L576 1253 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 PSTPIP2Q9H939 334 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 CUL9Q8IWT3 2517 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 GBF1Q92538 1859 aa18.73■□□□□ 0.59
SCLT1-204ENST00000503215 NBNO60934 754 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 CKBP12277 381 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 CPA1P15085 419 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 RFC2P35250 354 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 RNF20Q5VTR2 975 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 TRAF7Q6Q0C0 670 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 APOA5Q6Q788 366 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 DHX32Q7L7V1 743 aaKnown RBP18.72■□□□□ 0.59
SCLT1-204ENST00000503215 CUL5Q93034 780 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 KATNAL1Q9BW62 490 aa18.72■□□□□ 0.59
SCLT1-204ENST00000503215 ARHGEF15O94989 841 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 LGALS2P05162 132 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 SELPP16109 830 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 FUT2Q10981 343 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 TSGA10IPQ3SY00 556 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 GNPTABQ3T906 1256 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 PCNX4Q63HM2 1172 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 TYW1BQ6NUM6 668 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 LRRC8DQ7L1W4 858 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 TMCO2Q7Z6W1 182 aaPredicted RBP18.71■□□□□ 0.59
SCLT1-204ENST00000503215 TRIM50Q86XT4 487 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 CAGE1Q8TC20 777 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 AFAP1L1Q8TED9 768 aa18.71■□□□□ 0.59
SCLT1-204ENST00000503215 FAM217BQ9NTX9 383 aaPredicted RBP18.71■□□□□ 0.59
SCLT1-204ENST00000503215 FIBPO43427 364 aa18.7■□□□□ 0.58
SCLT1-204ENST00000503215 ATP9AO75110 1047 aa18.7■□□□□ 0.58
SCLT1-204ENST00000503215 SP4Q02446 784 aa18.7■□□□□ 0.58
SCLT1-204ENST00000503215 MBTPS1Q14703 1052 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms