RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 TRIM71Q2Q1W2 868 aaKnown RBP9.38□□□□□ -0.91
USP48-207ENST00000471752 NFRKBQ6P4R8 1299 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 MCF2L2Q86YR7 1114 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 RASEFQ8IZ41 740 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 IWS1Q96ST2 819 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 MRVI1Q9Y6F6 885 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 SLC4A7Q9Y6M7 1214 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 RAD50Q92878 1312 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 PNMA6FA0A0J9YX94 578 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 GCOM1H8Y6P7 765 aaPredicted RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 HAS3O00219 553 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 SH2B2O14492 632 aaPredicted RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 MEIS2O14770 477 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 ATP9AO75110 1047 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 GGPS1O95749 300 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 CA3P07451 260 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 POLR2MP0CAP2 368 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 CPA1P15085 419 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 ATP2A2P16615 1042 aaKnown RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 UBA1P22314 1058 aaKnown RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 IGFBP4P22692 258 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 NECTIN1Q15223 517 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 KIAA0753Q2KHM9 967 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 CELF3Q5SZQ8 465 aaKnown RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 CREB3L3Q68CJ9 461 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 DHX37Q8IY37 1157 aaKnown RBP9.37□□□□□ -0.91
USP48-207ENST00000471752 ZNF654Q8IZM8 581 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 NCOA7Q8NI08 942 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 ZBTB10Q96DT7 871 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 ESYT1Q9BSJ8 1104 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 C16orf70Q9BSU1 422 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 NCOR1O75376 2440 aa9.37□□□□□ -0.91
USP48-207ENST00000471752 PRRC2BQ5JSZ5 2229 aaKnown RBP9.36□□□□□ -0.91
USP48-207ENST00000471752 LAMA4Q16363 1823 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 SUPT20HL2P0C7V6 817 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 HOXD8P13378 290 aaPredicted RBP9.36□□□□□ -0.91
USP48-207ENST00000471752 DEFB103AP81534 67 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 TRDNQ13061 729 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 LAMC2Q13753 1193 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 MFSD10Q14728 455 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 UBE2SQ16763 222 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 ADCK5Q3MIX3 580 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 ZNF618Q5T7W0 954 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 TYW1BQ6NUM6 668 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 CYFIP1Q7L576 1253 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 RALYLQ86SE5 291 aaKnown RBP9.36□□□□□ -0.91
USP48-207ENST00000471752 TRIM50Q86XT4 487 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 RPUSD2Q8IZ73 545 aaKnown RBP9.36□□□□□ -0.91
USP48-207ENST00000471752 RUFY2Q8WXA3 655 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 SPATA33Q96N06 139 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 FTOQ9C0B1 505 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP48-207ENST00000471752 GTF2IRD1Q9UHL9 959 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 MSRAQ9UJ68 235 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 PNMA2Q9UL42 364 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 BRPF3Q9ULD4 1205 aa9.36□□□□□ -0.91
USP48-207ENST00000471752 TMEM265A0A087WTH1 108 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 SPATA31C2B4DYI2 1134 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 TREHO43280 583 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 KPNA6O60684 536 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 PPFIA3O75145 1194 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 CKBP12277 381 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 CASTP20810 708 aaKnown RBP9.35□□□□□ -0.91
USP48-207ENST00000471752 SP4Q02446 784 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 TFF2Q03403 129 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 TAP1Q03518 808 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 DGKDQ16760 1214 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 FAM117BQ6P1L5 589 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP48-207ENST00000471752 CATIPQ7Z7H3 387 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 RETREG2Q8NC44 543 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 PPTC7Q8NI37 304 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 CYP2W1Q8TAV3 490 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 EMID1Q96A84 441 aaPredicted RBP9.35□□□□□ -0.91
USP48-207ENST00000471752 UIMC1Q96RL1 719 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 RNPEPQ9H4A4 650 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 SLC28A3Q9HAS3 691 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 SETD4Q9NVD3 440 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 PKD2L1Q9P0L9 805 aa9.35□□□□□ -0.91
USP48-207ENST00000471752 LPXNO60711 386 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 PPFIA4O75335 1185 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 F2P00734 622 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 SELPP16109 830 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 EXOSC10Q01780 885 aaKnown RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 PTPN11Q06124 597 aaPredicted RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 FUT2Q10981 343 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 BRDTQ58F21 947 aaPredicted RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 UTP14CQ5TAP6 766 aaKnown RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 PPP2R2DQ66LE6 453 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 SESTD1Q86VW0 696 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 HERC6Q8IVU3 1022 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 MICALL1Q8N3F8 863 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 C7orf31Q8N865 590 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 PGBD1Q96JS3 809 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 NECAB3Q96P71 396 aaPredicted RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 INPP4AQ96PE3 977 aaPredicted RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 MPHOSPH6Q99547 160 aaKnown RBP9.34□□□□□ -0.91
USP48-207ENST00000471752 GPR20Q99678 358 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 SEZ6LQ9BYH1 1024 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 ANO2Q9NQ90 1003 aa9.34□□□□□ -0.91
USP48-207ENST00000471752 FAM217BQ9NTX9 383 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms