RNA–Protein interactions for RNA: YML046W

PRP39, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP39, Length 1,890 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP39	YML046W	HSH49	Q99181	213 aa	Predicted RBP	0.74	□□□□□ -2.29
PRP39	YML046W	SPT6	P23615	1451 aa	Known RBP	0.74	□□□□□ -2.29
PRP39	YML046W	SCC2	Q04002	1493 aa		0.74	□□□□□ -2.29
PRP39	YML046W	ARO1	P08566	1588 aa	Known RBP	0.74	□□□□□ -2.29
PRP39	YML046W	YAR066W	P0CX18	203 aa		0.73	□□□□□ -2.29
PRP39	YML046W	YHR214W	P0CX19	203 aa		0.73	□□□□□ -2.29
PRP39	YML046W	SAM1	P10659	382 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	GLK1	P17709	500 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	SAM2	P19358	384 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	NPL6	P32832	435 aa		0.73	□□□□□ -2.29
PRP39	YML046W	NUP133	P36161	1157 aa		0.73	□□□□□ -2.29
PRP39	YML046W	MIX23	P38162	196 aa		0.73	□□□□□ -2.29
PRP39	YML046W	BNA4	P38169	460 aa		0.73	□□□□□ -2.29
PRP39	YML046W	AFG3	P39925	761 aa		0.73	□□□□□ -2.29
PRP39	YML046W	PAP2	P53632	584 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	THP1	Q08231	455 aa		0.73	□□□□□ -2.29
PRP39	YML046W	SNQ2	P32568	1501 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	RSF2	P46974	1380 aa		0.73	□□□□□ -2.29
PRP39	YML046W	TY1B-NL2	Q99337	1749 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	SUC2	P00724	532 aa		0.73	□□□□□ -2.29
PRP39	YML046W	PUP3	P25451	205 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	SHP1	P34223	423 aa		0.73	□□□□□ -2.29
PRP39	YML046W	RIB5	P38145	238 aa		0.73	□□□□□ -2.29
PRP39	YML046W	UTP18	P40362	594 aa	Predicted RBP	0.73	□□□□□ -2.29
PRP39	YML046W	GCD10	P41814	478 aa		0.73	□□□□□ -2.29
PRP39	YML046W	ALK1	P43633	760 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	VID30	P53076	958 aa		0.73	□□□□□ -2.29
PRP39	YML046W	ART5	P53244	586 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	EFM6	P53970	246 aa		0.73	□□□□□ -2.29
PRP39	YML046W	DOS2	P54858	310 aa		0.73	□□□□□ -2.29
PRP39	YML046W	RCO1	Q04779	684 aa		0.73	□□□□□ -2.29
PRP39	YML046W	BLS1	Q06071	122 aa		0.73	□□□□□ -2.29
PRP39	YML046W	IMH1	Q06704	911 aa	Known RBP	0.73	□□□□□ -2.29
PRP39	YML046W	RTT109	Q07794	436 aa		0.73	□□□□□ -2.29
PRP39	YML046W	RPS8A	P0CX39	200 aa	Known RBP	0.72	□□□□□ -2.29
PRP39	YML046W	RPS8B	P0CX40	200 aa	Known RBP	0.72	□□□□□ -2.29
PRP39	YML046W	MTF2	P10849	440 aa		0.72	□□□□□ -2.29
PRP39	YML046W	PRE8	P23639	250 aa		0.72	□□□□□ -2.29
PRP39	YML046W	YCR100C	P25606	316 aa		0.72	□□□□□ -2.29
PRP39	YML046W	UBP11	P36026	717 aa		0.72	□□□□□ -2.29
PRP39	YML046W	RRT5	P43607	289 aa		0.72	□□□□□ -2.29
PRP39	YML046W	SSN8	P47821	323 aa		0.72	□□□□□ -2.29
PRP39	YML046W	BRO1	P48582	844 aa		0.72	□□□□□ -2.29
PRP39	YML046W	PIL1	P53252	339 aa	Known RBP	0.72	□□□□□ -2.29
PRP39	YML046W	CRH1	P53301	507 aa		0.72	□□□□□ -2.29
PRP39	YML046W	BRR1	Q99177	341 aa	Predicted RBP	0.72	□□□□□ -2.29
PRP39	YML046W	TOP2	P06786	1428 aa	Known RBP	0.72	□□□□□ -2.29
PRP39	YML046W	TRM3	Q07527	1436 aa		0.72	□□□□□ -2.29
PRP39	YML046W	MF(ALPHA)1	P01149	165 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MSM1	P22438	575 aa		0.71	□□□□□ -2.3
PRP39	YML046W	POP5	P28005	173 aa		0.71	□□□□□ -2.3
PRP39	YML046W	PAP1	P29468	568 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	MFT1	P33441	392 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	YBR144C	P34215	104 aa		0.71	□□□□□ -2.3
PRP39	YML046W	CBP4	P37267	147 aa		0.71	□□□□□ -2.3
PRP39	YML046W	YHL041W	P38730	149 aa		0.71	□□□□□ -2.3
PRP39	YML046W	ISC1	P40015	477 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	ARC35	P53731	342 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	ODC1	Q03028	310 aa		0.71	□□□□□ -2.3
PRP39	YML046W	BUD22	Q04347	519 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	NCE102	Q12207	173 aa	RIP-Chip data	0.71	□□□□□ -2.3	not detected
PRP39	YML046W	PDR11	P40550	1411 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MYO4	P32492	1471 aa		0.71	□□□□□ -2.3
PRP39	YML046W	STU1	P38198	1513 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MES1	P00958	751 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	RPB2	P08518	1224 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	SSB1	P11484	613 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	KGD1	P20967	1014 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	BUB3	P26449	341 aa		0.71	□□□□□ -2.3
PRP39	YML046W	SYN8	P31377	255 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MRP20	P32387	263 aa		0.71	□□□□□ -2.3
PRP39	YML046W	XRS2	P33301	854 aa		0.71	□□□□□ -2.3
PRP39	YML046W	AIM10	P39965	576 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	SSB2	P40150	613 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	LAM5	P43560	674 aa		0.71	□□□□□ -2.3
PRP39	YML046W	ZPR1	P53303	486 aa	Known RBP	0.71	□□□□□ -2.3
PRP39	YML046W	YPL107W	Q02873	248 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MRP51	Q02950	344 aa		0.71	□□□□□ -2.3
PRP39	YML046W	MSC1	Q03104	513 aa		0.71	□□□□□ -2.3
PRP39	YML046W	YKU80	Q04437	629 aa		0.71	□□□□□ -2.3
PRP39	YML046W	AHC1	Q12433	566 aa		0.71	□□□□□ -2.3
PRP39	YML046W	YDR034W-B	Q6Q5X2	51 aa		0.71	□□□□□ -2.3
PRP39	YML046W	SPO14	P36126	1683 aa		0.7	□□□□□ -2.3
PRP39	YML046W	TRP1	P00912	224 aa		0.7	□□□□□ -2.3
PRP39	YML046W	PEP4	P07267	405 aa	Known RBP	0.7	□□□□□ -2.3
PRP39	YML046W	NFT1	P0CE68	1218 aa		0.7	□□□□□ -2.3
PRP39	YML046W	CYS4	P32582	507 aa	Known RBP	0.7	□□□□□ -2.3
PRP39	YML046W	SSE2	P32590	693 aa	Known RBP	0.7	□□□□□ -2.3
PRP39	YML046W	IES6	P32617	166 aa		0.7	□□□□□ -2.3
PRP39	YML046W	TCM62	P38228	572 aa	Known RBP	0.7	□□□□□ -2.3
PRP39	YML046W	YBR225W	P38321	900 aa		0.7	□□□□□ -2.3
PRP39	YML046W	POP1	P41812	875 aa		0.7	□□□□□ -2.3
PRP39	YML046W	AAD10	P47182	288 aa		0.7	□□□□□ -2.3
PRP39	YML046W	DRN1	P53255	507 aa	Known RBP	0.7	□□□□□ -2.3
PRP39	YML046W	TOF2	Q02208	771 aa		0.7	□□□□□ -2.3
PRP39	YML046W	PNG1	Q02890	363 aa		0.7	□□□□□ -2.3
PRP39	YML046W	NYV1	Q12255	253 aa		0.7	□□□□□ -2.3
PRP39	YML046W	UFD4	P33202	1483 aa		0.7	□□□□□ -2.3
PRP39	YML046W	MAS2	P11914	482 aa		0.69	□□□□□ -2.3
PRP39	YML046W	YEF3	P16521	1044 aa	Known RBP	0.69	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms