RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C PRP2P20095 876 aaPredicted RBP1.92□□□□□ -2.1
PCF11YDR228C CHS3P29465 1165 aa1.92□□□□□ -2.1
PCF11YDR228C MUM2P38236 366 aa1.92□□□□□ -2.1
PCF11YDR228C SLX1P38324 304 aa1.92□□□□□ -2.1
PCF11YDR228C PIR3Q03180 325 aa1.92□□□□□ -2.1
PCF11YDR228C SSP2Q08646 371 aa1.92□□□□□ -2.1
PCF11YDR228C ADH2P00331 348 aaKnown RBP1.91□□□□□ -2.1
PCF11YDR228C NAT1P12945 854 aaKnown RBP1.91□□□□□ -2.1
PCF11YDR228C POL4P25615 582 aa1.91□□□□□ -2.1
PCF11YDR228C PWP2P25635 923 aaKnown RBP1.91□□□□□ -2.1
PCF11YDR228C BUB3P26449 341 aa1.91□□□□□ -2.1
PCF11YDR228C UBP11P36026 717 aa1.91□□□□□ -2.1
PCF11YDR228C NMD4Q12129 218 aa1.91□□□□□ -2.1
PCF11YDR228C SGS1P35187 1447 aa1.9□□□□□ -2.1
PCF11YDR228C CPR4P25334 318 aa1.9□□□□□ -2.1
PCF11YDR228C CDC60P26637 1090 aaKnown RBP1.9□□□□□ -2.1
PCF11YDR228C AVT4P50944 713 aa1.9□□□□□ -2.1
PCF11YDR228C SLG1P54867 378 aa1.9□□□□□ -2.1
PCF11YDR228C YEH1Q07804 573 aa1.9□□□□□ -2.1
PCF11YDR228C THP3Q12049 470 aaKnown RBP1.9□□□□□ -2.1
PCF11YDR228C RBD2Q12270 262 aa1.9□□□□□ -2.1
PCF11YDR228C YPT6Q99260 215 aa1.9□□□□□ -2.1
PCF11YDR228C NDI1P32340 513 aa1.9□□□□□ -2.11
PCF11YDR228C GLC7P32598 312 aaKnown RBP1.9□□□□□ -2.11
PCF11YDR228C SDH3P33421 198 aa1.9□□□□□ -2.11
PCF11YDR228C MSR1P38714 643 aa1.9□□□□□ -2.11
PCF11YDR228C ZPR1P53303 486 aaKnown RBP1.9□□□□□ -2.11
PCF11YDR228C OGG1P53397 376 aaPredicted RBP1.9□□□□□ -2.11
PCF11YDR228C VMS1Q04311 632 aaKnown RBP1.9□□□□□ -2.11
PCF11YDR228C NOP58Q12499 511 aaKnown RBP1.9□□□□□ -2.11
PCF11YDR228C HSC82P15108 705 aaKnown RBP1.89□□□□□ -2.11
PCF11YDR228C ATP11P32453 318 aa1.89□□□□□ -2.11
PCF11YDR228C MIX23P38162 196 aa1.89□□□□□ -2.11
PCF11YDR228C FUI1P38196 639 aa1.89□□□□□ -2.11
PCF11YDR228C YBL029WP38201 376 aa1.89□□□□□ -2.11
PCF11YDR228C YMR147WP40218 223 aaKnown RBP1.89□□□□□ -2.11
PCF11YDR228C LCL3P53153 274 aa1.89□□□□□ -2.11
PCF11YDR228C IBD2P53892 351 aa1.89□□□□□ -2.11
PCF11YDR228C NGL3Q03210 505 aa1.89□□□□□ -2.11
PCF11YDR228C MFB1Q04922 465 aa1.89□□□□□ -2.11
PCF11YDR228C OPY2Q06810 360 aa1.89□□□□□ -2.11
PCF11YDR228C BRR1Q99177 341 aaPredicted RBP1.89□□□□□ -2.11
PCF11YDR228C MES1P00958 751 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C CDC16P09798 840 aa1.88□□□□□ -2.11
PCF11YDR228C PRD1P25375 712 aa1.88□□□□□ -2.11
PCF11YDR228C CRM1P30822 1084 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C SEF1P34228 1148 aa1.88□□□□□ -2.11
PCF11YDR228C FRE2P36033 711 aa1.88□□□□□ -2.11
PCF11YDR228C NAT2P37293 288 aa1.88□□□□□ -2.11
PCF11YDR228C FLC2P39719 783 aa1.88□□□□□ -2.11
PCF11YDR228C ALG5P40350 334 aa1.88□□□□□ -2.11
PCF11YDR228C YFL067WP43537 175 aa1.88□□□□□ -2.11
PCF11YDR228C MEP3P53390 489 aa1.88□□□□□ -2.11
PCF11YDR228C TOF1P53840 1238 aa1.88□□□□□ -2.11
PCF11YDR228C FIN1Q03898 291 aa1.88□□□□□ -2.11
PCF11YDR228C TSA2Q04120 196 aa1.88□□□□□ -2.11
PCF11YDR228C TSR1Q07381 788 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C TCD2P36101 447 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C KEL1P38853 1164 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C MBB1P39534 108 aa1.88□□□□□ -2.11
PCF11YDR228C YJR008WP47085 338 aa1.88□□□□□ -2.11
PCF11YDR228C IMD4P50094 524 aaKnown RBP1.88□□□□□ -2.11
PCF11YDR228C VID30P53076 958 aa1.88□□□□□ -2.11
PCF11YDR228C IPI3P53877 555 aa1.88□□□□□ -2.11
PCF11YDR228C YLR108CQ12259 485 aa1.88□□□□□ -2.11
PCF11YDR228C YBR126W-AQ8TGU7 68 aa1.88□□□□□ -2.11
PCF11YDR228C COR1P07256 457 aa1.87□□□□□ -2.11
PCF11YDR228C EST1P17214 699 aaPredicted RBP1.87□□□□□ -2.11
PCF11YDR228C SYG1P40528 902 aa1.87□□□□□ -2.11
PCF11YDR228C TRS85P46944 698 aa1.87□□□□□ -2.11
PCF11YDR228C URB2P47108 1174 aa1.87□□□□□ -2.11
PCF11YDR228C DUO1P53168 247 aaKnown RBP1.87□□□□□ -2.11
PCF11YDR228C ODC1Q03028 310 aa1.87□□□□□ -2.11
PCF11YDR228C YMR027WQ04371 470 aa1.87□□□□□ -2.11
PCF11YDR228C RLM1Q12224 676 aa1.87□□□□□ -2.11
PCF11YDR228C RVS161P25343 265 aaKnown RBP1.86□□□□□ -2.11
PCF11YDR228C PAP1P29468 568 aaKnown RBP1.86□□□□□ -2.11
PCF11YDR228C PIM1P36775 1133 aa1.86□□□□□ -2.11
PCF11YDR228C ERP2P39704 215 aa1.86□□□□□ -2.11
PCF11YDR228C AFG3P39925 761 aa1.86□□□□□ -2.11
PCF11YDR228C LYS14P40971 790 aa1.86□□□□□ -2.11
PCF11YDR228C FDH1Q08911 376 aa1.86□□□□□ -2.11
PCF11YDR228C RRD2Q12461 358 aa1.86□□□□□ -2.11
PCF11YDR228C YDL012CQ12489 107 aa1.86□□□□□ -2.11
PCF11YDR228C YJR112W-AQ3E743 109 aa1.86□□□□□ -2.11
PCF11YDR228C LSB5P25369 354 aa1.86□□□□□ -2.11
PCF11YDR228C WBP1P33767 430 aaKnown RBP1.86□□□□□ -2.11
PCF11YDR228C PAN6P40459 309 aa1.86□□□□□ -2.11
PCF11YDR228C TMA108P40462 946 aa1.86□□□□□ -2.11
PCF11YDR228C POP6P53218 158 aa1.86□□□□□ -2.11
PCF11YDR228C SHY1P53266 389 aa1.86□□□□□ -2.11
PCF11YDR228C HRI1Q05905 244 aaKnown RBP1.86□□□□□ -2.11
PCF11YDR228C VPS38Q05919 439 aa1.86□□□□□ -2.11
PCF11YDR228C YLL032CQ07834 825 aaKnown RBP RIP-Chip data1.86□□□□□ -2.11not detected
PCF11YDR228C PET123P17558 318 aa1.85□□□□□ -2.11
PCF11YDR228C YCR100CP25606 316 aa1.85□□□□□ -2.11
PCF11YDR228C RSM22P36056 628 aa1.85□□□□□ -2.11
PCF11YDR228C SGN1P40561 250 aaKnown RBP RIP-Chip data1.85□□□□□ -2.11not detected
PCF11YDR228C GOR1P53839 350 aa1.85□□□□□ -2.11
PCF11YDR228C WTM1Q12363 437 aaKnown RBP1.85□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms