RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W UPF3P48412 387 aaKnown RBP2.08□□□□□ -2.08
SIR4YDR227W RPL4BP49626 362 aaKnown RBP2.08□□□□□ -2.08
SIR4YDR227W EFM5P53200 248 aaKnown RBP2.08□□□□□ -2.08
SIR4YDR227W VPS75P53853 264 aa2.08□□□□□ -2.08
SIR4YDR227W IBD2P53892 351 aa2.08□□□□□ -2.08
SIR4YDR227W TAF12Q03761 539 aa2.08□□□□□ -2.08
SIR4YDR227W ATG23Q06671 453 aa2.08□□□□□ -2.08
SIR4YDR227W YLL007CQ07799 665 aa2.08□□□□□ -2.08
SIR4YDR227W BRX1Q08235 291 aaKnown RBP2.08□□□□□ -2.08
SIR4YDR227W UPC2Q12151 913 aa2.08□□□□□ -2.08
SIR4YDR227W HXK2P04807 486 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W RPL7AP05737 244 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W VMA16P23968 213 aa2.07□□□□□ -2.08
SIR4YDR227W VAC17P25591 423 aa2.07□□□□□ -2.08
SIR4YDR227W SPP381P38282 291 aaPredicted RBP2.07□□□□□ -2.08
SIR4YDR227W RIX1P38883 763 aaPredicted RBP2.07□□□□□ -2.08
SIR4YDR227W SRP14P38985 146 aa2.07□□□□□ -2.08
SIR4YDR227W YAR028WP39548 234 aa2.07□□□□□ -2.08
SIR4YDR227W ERV46P39727 415 aa2.07□□□□□ -2.08
SIR4YDR227W BAP3P41815 604 aa2.07□□□□□ -2.08
SIR4YDR227W COQ5P49017 307 aa2.07□□□□□ -2.08
SIR4YDR227W YGL082WP53155 381 aa2.07□□□□□ -2.08
SIR4YDR227W RPT4P53549 437 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W ESBP6P53918 673 aa2.07□□□□□ -2.08
SIR4YDR227W VPS64Q03944 604 aa2.07□□□□□ -2.08
SIR4YDR227W RRB1Q04225 511 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W EMG1Q06287 252 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W BUD7Q08754 746 aa2.07□□□□□ -2.08
SIR4YDR227W PSH1Q12161 406 aa2.07□□□□□ -2.08
SIR4YDR227W RPL7BQ12213 244 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W TRP3P00937 484 aa2.07□□□□□ -2.08
SIR4YDR227W YPK2P18961 677 aa2.07□□□□□ -2.08
SIR4YDR227W CAD1P24813 409 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W CAP1P28495 268 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W RAD23P32628 398 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W ELM1P32801 640 aa2.07□□□□□ -2.08
SIR4YDR227W SWH1P35845 1188 aa2.07□□□□□ -2.08
SIR4YDR227W OAF3P36023 863 aa2.07□□□□□ -2.08
SIR4YDR227W FLR1P38124 548 aa2.07□□□□□ -2.08
SIR4YDR227W BTT1P40314 149 aaPredicted RBP2.07□□□□□ -2.08
SIR4YDR227W OCA2P53949 197 aa2.07□□□□□ -2.08
SIR4YDR227W PRO2P54885 456 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W YMR310CQ04867 317 aaPredicted RBP2.07□□□□□ -2.08
SIR4YDR227W CRN1Q06440 651 aa2.07□□□□□ -2.08
SIR4YDR227W YLR040CQ07988 224 aa2.07□□□□□ -2.08
SIR4YDR227W DDC1Q08949 612 aa2.07□□□□□ -2.08
SIR4YDR227W PHO2P07269 559 aa2.07□□□□□ -2.08
SIR4YDR227W APL1P27351 700 aa2.07□□□□□ -2.08
SIR4YDR227W BMH1P29311 267 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W AIM26P32858 118 aa2.07□□□□□ -2.08
SIR4YDR227W GEX2P36173 615 aa2.07□□□□□ -2.08
SIR4YDR227W SUL1P38359 859 aa2.07□□□□□ -2.08
SIR4YDR227W MTC6P38849 526 aa2.07□□□□□ -2.08
SIR4YDR227W GPI16P38875 610 aa2.07□□□□□ -2.08
SIR4YDR227W PHB2P50085 310 aa2.07□□□□□ -2.08
SIR4YDR227W SBH2P52871 88 aa2.07□□□□□ -2.08
SIR4YDR227W TAF6P53040 516 aa2.07□□□□□ -2.08
SIR4YDR227W EGD1Q02642 157 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W TPP1Q03796 238 aa2.07□□□□□ -2.08
SIR4YDR227W VPS38Q05919 439 aa2.07□□□□□ -2.08
SIR4YDR227W GPM2Q12008 311 aa2.07□□□□□ -2.08
SIR4YDR227W ADF1Q2V2Q1 113 aa2.07□□□□□ -2.08
SIR4YDR227W ECM3Q99252 613 aa2.07□□□□□ -2.08
SIR4YDR227W IRA1P18963 3092 aa2.07□□□□□ -2.08
SIR4YDR227W FRS2P15625 503 aaKnown RBP2.07□□□□□ -2.08
SIR4YDR227W ERG8P24521 451 aa2.07□□□□□ -2.08
SIR4YDR227W TMT1P32643 299 aa2.07□□□□□ -2.08
SIR4YDR227W TPO5P36029 618 aa2.07□□□□□ -2.08
SIR4YDR227W ICS2P38284 255 aa2.07□□□□□ -2.08
SIR4YDR227W YHR210CP38893 341 aa2.07□□□□□ -2.08
SIR4YDR227W CAK1P43568 368 aaPredicted RBP2.07□□□□□ -2.08
SIR4YDR227W YGL235WP53071 178 aa2.07□□□□□ -2.08
SIR4YDR227W BOP2Q06150 570 aa2.07□□□□□ -2.08
SIR4YDR227W CSF1Q12150 2958 aa2.06□□□□□ -2.08
SIR4YDR227W HIP1P06775 603 aa2.06□□□□□ -2.08
SIR4YDR227W YLL053CP0CD98 152 aa2.06□□□□□ -2.08
SIR4YDR227W SNF5P18480 905 aa2.06□□□□□ -2.08
SIR4YDR227W DBP7P36120 742 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W NOP4P37838 685 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W YSW1P38280 609 aa2.06□□□□□ -2.08
SIR4YDR227W EXO5P38289 585 aa2.06□□□□□ -2.08
SIR4YDR227W MPH1P40562 993 aa2.06□□□□□ -2.08
SIR4YDR227W GCD10P41814 478 aa2.06□□□□□ -2.08
SIR4YDR227W SSY5P47002 699 aa2.06□□□□□ -2.08
SIR4YDR227W GTF1P53260 183 aaPredicted RBP2.06□□□□□ -2.08
SIR4YDR227W HDA1P53973 706 aa2.06□□□□□ -2.08
SIR4YDR227W YML119WQ03208 357 aa2.06□□□□□ -2.08
SIR4YDR227W YDR179W-AQ03983 463 aa2.06□□□□□ -2.08
SIR4YDR227W SNX41Q04053 625 aa2.06□□□□□ -2.08
SIR4YDR227W YLR407WQ06070 228 aa2.06□□□□□ -2.08
SIR4YDR227W SMD2Q06217 110 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W GPN3Q06543 272 aa2.06□□□□□ -2.08
SIR4YDR227W AFT2Q08957 416 aa2.06□□□□□ -2.08
SIR4YDR227W AIM41Q12032 185 aa2.06□□□□□ -2.08
SIR4YDR227W LSP1Q12230 341 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W UBR2Q07963 1872 aa2.06□□□□□ -2.08
SIR4YDR227W ILS1P09436 1072 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W RPL27AP0C2H6 136 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W RPL27BP0C2H7 136 aaKnown RBP2.06□□□□□ -2.08
SIR4YDR227W TPM1P17536 199 aaKnown RBP2.06□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms