RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 LRRC26Q2I0M4 334 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 LRIT3Q3SXY7 679 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 GIMAP6Q6P9H5 292 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 SPICE1Q8N0Z3 855 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 NPLOC4Q8TAT6 608 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 LBHD1Q9BQE6 289 aaPredicted RBP8.59□□□□□ -1.03
USP46-208ENST00000512656 GRIP2Q9C0E4 1043 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 ZNF287Q9HBT7 754 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 PRKAG2Q9UGJ0 569 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 DYRK1BQ9Y463 629 aa8.59□□□□□ -1.03
USP46-208ENST00000512656 DDX60LQ5H9U9 1706 aaKnown RBP8.59□□□□□ -1.03
USP46-208ENST00000512656 CYP2D7A0A087X1C5 515 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 SPATA31C2B4DYI2 1134 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 KBTBD13C9JR72 458 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 RNF225M0QZC1 329 aaPredicted RBP8.58□□□□□ -1.04
USP46-208ENST00000512656 SEPT4O43236 478 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 RAD21O60216 631 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 ZFYP08048 801 aaPredicted RBP8.58□□□□□ -1.04
USP46-208ENST00000512656 EEF2P13639 858 aaKnown RBP8.58□□□□□ -1.04
USP46-208ENST00000512656 GNAT2P19087 354 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 KCTD2Q14681 263 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 SLFNL1Q499Z3 407 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 SBK1Q52WX2 424 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 CTR9Q6PD62 1173 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 SIAH1Q8IUQ4 282 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 TRIM22Q8IYM9 498 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 KBTBD3Q8NAB2 608 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 ATG4CQ96DT6 458 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 PUS7LQ9H0K6 701 aaKnown RBP8.58□□□□□ -1.04
USP46-208ENST00000512656 OSBPL3Q9H4L5 887 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 MKNK2Q9HBH9 465 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 NRBP1Q9UHY1 535 aa8.58□□□□□ -1.04
USP46-208ENST00000512656 SOX1O00570 391 aaPredicted RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 SMARCA5O60264 1052 aaPredicted RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 COBLO75128 1261 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 IGHA2P01877 340 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 STAT3P40763 770 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 SCTRP47872 440 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 SRSF11Q05519 484 aaKnown RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 TMEM132BQ14DG7 1078 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 KIAA1755Q5JYT7 1200 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 ZNF385CQ66K41 422 aaPredicted RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 FOXR1Q6PIV2 292 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 RIOX2Q8IUF8 465 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 CLEC10AQ8IUN9 316 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 TRPV1Q8NER1 839 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 APPBP2Q92624 585 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 MAML3Q96JK9 1138 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 STRBPQ96SI9 672 aaKnown RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 MMP19Q99542 508 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 DCTPP1Q9H773 170 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 NYAP2Q9P242 653 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 PPP1R9AQ9ULJ8 1098 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 ADAMTS5Q9UNA0 930 aa8.57□□□□□ -1.04
USP46-208ENST00000512656 DIS3Q9Y2L1 958 aaKnown RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 CTDP1Q9Y5B0 961 aaPredicted RBP8.57□□□□□ -1.04
USP46-208ENST00000512656 ALPK3Q96L96 1907 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 GSG1L2A8MUP6 293 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 MINDY4BA8MYZ0 360 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 VWA5AO00534 786 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 ERC2O15083 957 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 RNF113AO15541 343 aaKnown RBP8.56□□□□□ -1.04
USP46-208ENST00000512656 APPP05067 770 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 RTP1P59025 263 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 GJC2Q5T442 439 aaPredicted RBP8.56□□□□□ -1.04
USP46-208ENST00000512656 C20orf194Q5TEA3 1177 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 ZNF444Q8N0Y2 327 aaPredicted RBP8.56□□□□□ -1.04
USP46-208ENST00000512656 DEFB123Q8N688 67 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 SLC17A8Q8NDX2 589 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 SLF1Q9BQI6 1058 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 TEX13BQ9BXU2 312 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 NACAP1Q9BZK3 213 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 LAMA2P24043 3122 aaKnown RBP8.56□□□□□ -1.04
USP46-208ENST00000512656 ZNF236Q9UL36 1845 aa8.56□□□□□ -1.04
USP46-208ENST00000512656 COL6A3P12111 3177 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 ZBED4O75132 1171 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 CHGBP05060 677 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 SLC3A2P08195 630 aaKnown RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 RARBP10826 455 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 RHOQP17081 205 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 RASA1P20936 1047 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 TDO2P48775 406 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 FAM83BQ5T0W9 1011 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 RNF180Q86T96 592 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 SVOPQ8N4V2 548 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 MSL3Q8N5Y2 521 aaKnown RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 PRPF38AQ8NAV1 312 aaKnown RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 ZNF837Q96EG3 531 aaPredicted RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 TINF2Q9BSI4 451 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 FBXO28Q9NVF7 368 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 CUEDC1Q9NWM3 386 aaPredicted RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 ZNF214Q9UL59 606 aaPredicted RBP8.55□□□□□ -1.04
USP46-208ENST00000512656 SYNPO2Q9UMS6 1093 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 CNPY2Q9Y2B0 182 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 ATP11BQ9Y2G3 1177 aa8.55□□□□□ -1.04
USP46-208ENST00000512656 TTC41PQ6P2S7 1318 aa8.54□□□□□ -1.04
USP46-208ENST00000512656 A0A0G2JMZ2 1700 aa8.54□□□□□ -1.04
USP46-208ENST00000512656 ROBO3Q96MS0 1386 aa8.54□□□□□ -1.04
USP46-208ENST00000512656 PATL2C9JE40 543 aaKnown RBP8.54□□□□□ -1.04
USP46-208ENST00000512656 F5H6K3 240 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms