RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 PRKAR2AP13861 404 aaKnown RBP19.62■□□□□ 0.73
HDAC6-235ENST00000495515 CYP2C19P33261 490 aa19.62■□□□□ 0.73
HDAC6-235ENST00000495515 TRIM29Q14134 588 aa19.62■□□□□ 0.73
HDAC6-235ENST00000495515 ARMCX2Q7L311 632 aa19.62■□□□□ 0.73
HDAC6-235ENST00000495515 FGD4Q96M96 766 aa19.62■□□□□ 0.73
HDAC6-235ENST00000495515 PURBQ96QR8 312 aaKnown RBP19.62■□□□□ 0.73
HDAC6-235ENST00000495515 COL20A1Q9P218 1284 aa19.62■□□□□ 0.73
HDAC6-235ENST00000495515 IGHA2P01877 340 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 FDPSP14324 419 aaKnown RBP19.61■□□□□ 0.73
HDAC6-235ENST00000495515 PDE4DQ08499 809 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 AP3B2Q13367 1082 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 MORC4Q8TE76 937 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 ZNF333Q96JL9 665 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 ABHD16BQ9H3Z7 469 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 HMX1Q9NP08 348 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-235ENST00000495515 PXMP2Q9NR77 195 aa19.61■□□□□ 0.73
HDAC6-235ENST00000495515 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-235ENST00000495515 RPTORQ8N122 1335 aa19.6■□□□□ 0.73
HDAC6-235ENST00000495515 EIF2AK2P19525 551 aaKnown RBP19.6■□□□□ 0.73
HDAC6-235ENST00000495515 CACNB2Q08289 660 aaPredicted RBP19.6■□□□□ 0.73
HDAC6-235ENST00000495515 UBE2SQ16763 222 aa19.6■□□□□ 0.73
HDAC6-235ENST00000495515 MAP3K21Q5TCX8 1036 aa19.6■□□□□ 0.73
HDAC6-235ENST00000495515 REXO1Q8N1G1 1221 aaKnown RBP19.6■□□□□ 0.73
HDAC6-235ENST00000495515 AIFM3Q96NN9 605 aa19.6■□□□□ 0.73
HDAC6-235ENST00000495515 SMCHD1A6NHR9 2005 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 ASTN1O14525 1302 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 EDNRBP24530 442 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 TRIM32Q13049 653 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 CUL4AQ13619 759 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 STXBP2Q15833 593 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 PDCD2LQ9BRP1 358 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 BRMS1Q9HCU9 246 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 VTA1Q9NP79 307 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 PCDHA6Q9UN73 950 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 PCDHA4Q9UN74 947 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 SMC3Q9UQE7 1217 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 PCDHA8Q9Y5H6 950 aa19.59■□□□□ 0.73
HDAC6-235ENST00000495515 SNAI1O95863 264 aaPredicted RBP19.58■□□□□ 0.72
HDAC6-235ENST00000495515 NR3C2P08235 984 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 CYBAP13498 195 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 CCND2P30279 289 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 ACVR2BQ13705 512 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 XRRA1Q6P2D8 792 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 DAGLBQ8NCG7 672 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 C8orf76Q96K31 380 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 TMEM106CQ9BVX2 250 aa19.58■□□□□ 0.72
HDAC6-235ENST00000495515 ZHX1Q9UKY1 873 aaPredicted RBP19.58■□□□□ 0.72
HDAC6-235ENST00000495515 FRMPD4Q14CM0 1322 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 MSCO60682 206 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 DTNBO60941 627 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 EIF3JO75822 258 aaKnown RBP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 CCL5P13501 91 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 CNGA1P29973 690 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 CLK2P49760 499 aaKnown RBP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 MLLT1Q03111 559 aaPredicted RBP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 PGM5Q15124 567 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 JAKMIP3Q5VZ66 844 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 BLIDQ8IZY5 108 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 PHF20Q9BVI0 1012 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 RNF208Q9H0X6 261 aa19.57■□□□□ 0.72
HDAC6-235ENST00000495515 RBBP6Q7Z6E9 1792 aaKnown RBP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 ZNFX1Q9P2E3 1918 aaKnown RBP19.57■□□□□ 0.72
HDAC6-235ENST00000495515 STAM2O75886 525 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 MYCP01106 439 aaPredicted RBP19.56■□□□□ 0.72
HDAC6-235ENST00000495515 MYCLP12524 364 aaPredicted RBP19.56■□□□□ 0.72
HDAC6-235ENST00000495515 RGS19P49795 217 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 SAFBQ15424 915 aaKnown RBP eCLIP19.56■□□□□ 0.72
HDAC6-235ENST00000495515 PRAMEF19Q5SWL8 479 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 VSIG10LQ86VR7 867 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 INTS4Q96HW7 963 aaKnown RBP19.56■□□□□ 0.72
HDAC6-235ENST00000495515 ANO3Q9BYT9 981 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 UNC93B1Q9H1C4 597 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 FAM184BQ9ULE4 1060 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 KCNJ14Q9UNX9 436 aa19.56■□□□□ 0.72
HDAC6-235ENST00000495515 SEPT4O43236 478 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 HSP90AA1P07900 732 aaKnown RBP19.55■□□□□ 0.72
HDAC6-235ENST00000495515 ZNF865P0CJ78 1059 aaPredicted RBP19.55■□□□□ 0.72
HDAC6-235ENST00000495515 AKR1A1P14550 325 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 GJB2P29033 226 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 CCND3P30281 292 aaPredicted RBP19.55■□□□□ 0.72
HDAC6-235ENST00000495515 MTFR1Q15390 333 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 PCNX4Q63HM2 1172 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 EEPD1Q7L9B9 569 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 SHISA4Q96DD7 197 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 TMEM260Q9NX78 707 aa19.55■□□□□ 0.72
HDAC6-235ENST00000495515 CAPN2P17655 700 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 KRT2P35908 639 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 GNPTABQ3T906 1256 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 KRT40Q6A162 431 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 FBXO16Q8IX29 292 aaPredicted RBP19.54■□□□□ 0.72
HDAC6-235ENST00000495515 TRPV1Q8NER1 839 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 PAK6Q9NQU5 681 aaPredicted RBP19.54■□□□□ 0.72
HDAC6-235ENST00000495515 DDX20Q9UHI6 824 aaKnown RBP19.54■□□□□ 0.72
HDAC6-235ENST00000495515 PLXNA1Q9UIW2 1896 aa19.54■□□□□ 0.72
HDAC6-235ENST00000495515 CCDC194A0A1B0GVG4 234 aa19.53■□□□□ 0.72
HDAC6-235ENST00000495515 MMP1P03956 469 aa19.53■□□□□ 0.72
HDAC6-235ENST00000495515 GJB1P08034 283 aa19.53■□□□□ 0.72
HDAC6-235ENST00000495515 SREBF1P36956 1147 aa19.53■□□□□ 0.72
HDAC6-235ENST00000495515 FOSBP53539 338 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms