RNA–Protein interactions for RNA: YPL056C

LCL1, Transcript of Putative protein of unknown function, yeast

Gene LCL1, Length 306 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCL1	YPL056C	ITT1	Q04638	464 aa		3.56	□□□□□ -1.84
LCL1	YPL056C	YOR1	P53049	1477 aa		3.55	□□□□□ -1.84
LCL1	YPL056C	MMS1	Q06211	1407 aa		3.55	□□□□□ -1.84
LCL1	YPL056C	SMC4	Q12267	1418 aa		3.55	□□□□□ -1.84
LCL1	YPL056C	AMS1	P22855	1083 aa		3.55	□□□□□ -1.84
LCL1	YPL056C	SPP41	P38904	1435 aa		3.54	□□□□□ -1.84
LCL1	YPL056C	PEX29	Q03370	554 aa		3.54	□□□□□ -1.84
LCL1	YPL056C	YML082W	Q04533	649 aa	Known RBP	3.54	□□□□□ -1.84
LCL1	YPL056C	DNF2	Q12675	1612 aa		3.54	□□□□□ -1.84
LCL1	YPL056C	VTH1	P40438	1549 aa		3.54	□□□□□ -1.84
LCL1	YPL056C	VTH2	P40890	1549 aa		3.54	□□□□□ -1.84
LCL1	YPL056C	DRS2	P39524	1355 aa		3.53	□□□□□ -1.84
LCL1	YPL056C	AI2	P03876	854 aa		3.53	□□□□□ -1.84
LCL1	YPL056C	STU1	P38198	1513 aa		3.53	□□□□□ -1.84
LCL1	YPL056C	OXP1	P28273	1286 aa		3.52	□□□□□ -1.85
LCL1	YPL056C	RPS0B	P46654	252 aa	Known RBP	3.52	□□□□□ -1.85
LCL1	YPL056C	TCB2	P48231	1178 aa		3.52	□□□□□ -1.85
LCL1	YPL056C	TSC11	P40061	1430 aa		3.52	□□□□□ -1.85
LCL1	YPL056C	HTA1	P04911	132 aa	Known RBP	3.51	□□□□□ -1.85
LCL1	YPL056C	HTA2	P04912	132 aa		3.51	□□□□□ -1.85
LCL1	YPL056C	ABP1	P15891	592 aa	Known RBP	3.51	□□□□□ -1.85
LCL1	YPL056C	ENP1	P38333	483 aa	Known RBP	3.51	□□□□□ -1.85
LCL1	YPL056C	YFR006W	P43590	535 aa		3.51	□□□□□ -1.85
LCL1	YPL056C	SPO14	P36126	1683 aa		3.5	□□□□□ -1.85
LCL1	YPL056C	NUP170	P38181	1502 aa		3.49	□□□□□ -1.85
LCL1	YPL056C	MYO4	P32492	1471 aa		3.49	□□□□□ -1.85
LCL1	YPL056C	BRE2	P43132	505 aa		3.49	□□□□□ -1.85
LCL1	YPL056C	STH1	P32597	1359 aa		3.49	□□□□□ -1.85
LCL1	YPL056C	DOP1	Q03921	1698 aa		3.48	□□□□□ -1.85
LCL1	YPL056C	SNQ2	P32568	1501 aa	Known RBP	3.48	□□□□□ -1.85
LCL1	YPL056C	ULS1	Q08562	1619 aa		3.48	□□□□□ -1.85
LCL1	YPL056C	SNT2	P53127	1403 aa		3.47	□□□□□ -1.85
LCL1	YPL056C	DCW1	P36091	449 aa		3.47	□□□□□ -1.85
LCL1	YPL056C	YOR093C	Q12275	1648 aa		3.47	□□□□□ -1.85
LCL1	YPL056C	PDR12	Q02785	1511 aa		3.45	□□□□□ -1.86
LCL1	YPL056C	TFA1	P36100	482 aa		3.45	□□□□□ -1.86
LCL1	YPL056C	MLP2	P40457	1679 aa		3.44	□□□□□ -1.86
LCL1	YPL056C	DBP1	P24784	617 aa	Known RBP	3.44	□□□□□ -1.86
LCL1	YPL056C	CWC22	P53333	577 aa	Known RBP	3.44	□□□□□ -1.86
LCL1	YPL056C	GYP5	Q12344	894 aa		3.44	□□□□□ -1.86
LCL1	YPL056C	TRM3	Q07527	1436 aa		3.44	□□□□□ -1.86
LCL1	YPL056C	PTP3	P40048	928 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	MID1	P41821	548 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	BNI4	P53858	892 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	YDL176W	Q12027	708 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	RLF2	Q12495	606 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	GDB1	Q06625	1536 aa		3.43	□□□□□ -1.86
LCL1	YPL056C	SEC3	P33332	1336 aa	Known RBP	3.43	□□□□□ -1.86
LCL1	YPL056C	MNN4	P36044	1178 aa		3.42	□□□□□ -1.86
LCL1	YPL056C	YRB30	P53107	440 aa	Predicted RBP	3.42	□□□□□ -1.86
LCL1	YPL056C	NOP53	Q12080	455 aa	Known RBP	3.42	□□□□□ -1.86
LCL1	YPL056C	IQG1	Q12280	1495 aa		3.41	□□□□□ -1.86
LCL1	YPL056C	CHC1	P22137	1653 aa	Known RBP	3.41	□□□□□ -1.86
LCL1	YPL056C	CLC1	P17891	233 aa		3.41	□□□□□ -1.86
LCL1	YPL056C	IME2	P32581	645 aa		3.41	□□□□□ -1.86
LCL1	YPL056C	PTC2	P39966	464 aa	Known RBP	3.41	□□□□□ -1.86
LCL1	YPL056C	KRI1	P42846	591 aa	Known RBP	3.41	□□□□□ -1.86
LCL1	YPL056C	YTA7	P40340	1379 aa		3.4	□□□□□ -1.86
LCL1	YPL056C	QCR6	P00127	147 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	SDH2	P21801	266 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	MET22	P32179	357 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	LEO1	P38439	464 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	MET10	P39692	1035 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	PDR10	P51533	1564 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	3.4	□□□□□ -1.87	RIP-Chip
LCL1	YPL056C	BUD3	P25558	1636 aa		3.4	□□□□□ -1.87
LCL1	YPL056C	ARO1	P08566	1588 aa	Known RBP	3.39	□□□□□ -1.87
LCL1	YPL056C	PRS1	P32895	427 aa	Known RBP	3.39	□□□□□ -1.87
LCL1	YPL056C	NUG1	P40010	520 aa	Known RBP	3.39	□□□□□ -1.87
LCL1	YPL056C	YGR130C	P53278	816 aa		3.39	□□□□□ -1.87
LCL1	YPL056C	HAP5	Q02516	242 aa		3.39	□□□□□ -1.87
LCL1	YPL056C	DNF3	Q12674	1656 aa		3.39	□□□□□ -1.87
LCL1	YPL056C	SPT7	P35177	1332 aa		3.39	□□□□□ -1.87
LCL1	YPL056C	PDR15	Q04182	1529 aa	Known RBP	3.38	□□□□□ -1.87
LCL1	YPL056C	NUP157	P40064	1391 aa	Known RBP	3.38	□□□□□ -1.87
LCL1	YPL056C	FPR3	P38911	411 aa	Known RBP	3.37	□□□□□ -1.87
LCL1	YPL056C	ENV11	P53246	860 aa		3.37	□□□□□ -1.87
LCL1	YPL056C	DEF1	P35732	738 aa	Known RBP	3.36	□□□□□ -1.87
LCL1	YPL056C	OPY1	P38271	328 aa		3.36	□□□□□ -1.87
LCL1	YPL056C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
LCL1	YPL056C	GCR2	Q01722	534 aa		3.36	□□□□□ -1.87
LCL1	YPL056C	AIM44	Q99299	758 aa		3.36	□□□□□ -1.87
LCL1	YPL056C	STS1	P38637	319 aa		3.35	□□□□□ -1.87
LCL1	YPL056C	RTT106	P40161	455 aa		3.35	□□□□□ -1.87
LCL1	YPL056C	POL5	P39985	1022 aa	Known RBP	3.34	□□□□□ -1.87
LCL1	YPL056C	RSM7	P47150	247 aa		3.34	□□□□□ -1.87
LCL1	YPL056C	ENV9	Q08651	330 aa		3.34	□□□□□ -1.87
LCL1	YPL056C	YPR015C	Q12531	247 aa		3.34	□□□□□ -1.87
LCL1	YPL056C	SRB8	P25648	1427 aa		3.34	□□□□□ -1.88
LCL1	YPL056C	RIX1	P38883	763 aa	Predicted RBP	3.33	□□□□□ -1.88
LCL1	YPL056C	IKI3	Q06706	1349 aa	Known RBP	3.33	□□□□□ -1.88
LCL1	YPL056C	CFT1	Q06632	1357 aa	Known RBP	3.33	□□□□□ -1.88
LCL1	YPL056C	YLR419W	Q06698	1435 aa	Known RBP	3.33	□□□□□ -1.88
LCL1	YPL056C	TY3B-G	Q99315	1547 aa		3.33	□□□□□ -1.88
LCL1	YPL056C	YBT1	P32386	1661 aa		3.33	□□□□□ -1.88
LCL1	YPL056C	VPS29	P38759	282 aa		3.31	□□□□□ -1.88
LCL1	YPL056C	SNF7	P39929	240 aa	Known RBP	3.31	□□□□□ -1.88
LCL1	YPL056C	EAF7	P53911	425 aa	Known RBP	3.31	□□□□□ -1.88
LCL1	YPL056C	FPR4	Q06205	392 aa	Predicted RBP	3.31	□□□□□ -1.88
LCL1	YPL056C	SEC7	P11075	2009 aa	Known RBP	3.31	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 31.1 ms