RNA–Protein interactions for RNA: YOL148C

SPT20, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeast

Gene SPT20, Length 1,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT20	YOL148C	ARL1	P38116	183 aa	Known RBP	11.58	□□□□□ -0.56
SPT20	YOL148C	CTR9	P89105	1077 aa		11.58	□□□□□ -0.56
SPT20	YOL148C	NOP58	Q12499	511 aa	Known RBP	11.58	□□□□□ -0.56
SPT20	YOL148C	LSP1	Q12230	341 aa	Known RBP	11.56	□□□□□ -0.56
SPT20	YOL148C	DRS2	P39524	1355 aa		11.54	□□□□□ -0.56
SPT20	YOL148C	RTG3	P38165	486 aa		11.54	□□□□□ -0.56
SPT20	YOL148C	MET10	P39692	1035 aa		11.54	□□□□□ -0.56
SPT20	YOL148C	SPO14	P36126	1683 aa		11.53	□□□□□ -0.56
SPT20	YOL148C	MPP10	P47083	593 aa	Known RBP	11.53	□□□□□ -0.56
SPT20	YOL148C	YPP1	P46951	817 aa		11.51	□□□□□ -0.57
SPT20	YOL148C	TRM3	Q07527	1436 aa		11.51	□□□□□ -0.57
SPT20	YOL148C	SPE2	P21182	396 aa		11.51	□□□□□ -0.57
SPT20	YOL148C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	11.51	□□□□□ -0.57	not detected
SPT20	YOL148C	KNS1	P32350	737 aa	Predicted RBP	11.5	□□□□□ -0.57
SPT20	YOL148C	TRK1	P12685	1235 aa		11.49	□□□□□ -0.57
SPT20	YOL148C	MLP1	Q02455	1875 aa	Known RBP	11.49	□□□□□ -0.57
SPT20	YOL148C	DOP1	Q03921	1698 aa		11.49	□□□□□ -0.57
SPT20	YOL148C	CHC1	P22137	1653 aa	Known RBP	11.48	□□□□□ -0.57
SPT20	YOL148C	SNF2	P22082	1703 aa		11.48	□□□□□ -0.57
SPT20	YOL148C	YGR130C	P53278	816 aa		11.48	□□□□□ -0.57
SPT20	YOL148C	TEA1	P47988	759 aa		11.47	□□□□□ -0.57
SPT20	YOL148C	RPA190	P10964	1664 aa	Known RBP	11.47	□□□□□ -0.57
SPT20	YOL148C	URN1	Q06525	465 aa	Known RBP	11.46	□□□□□ -0.57
SPT20	YOL148C	PDR11	P40550	1411 aa		11.46	□□□□□ -0.58
SPT20	YOL148C	RLF2	Q12495	606 aa		11.46	□□□□□ -0.58
SPT20	YOL148C	NAP1	P25293	417 aa	Known RBP	11.45	□□□□□ -0.58
SPT20	YOL148C	YEF3	P16521	1044 aa	Known RBP	11.44	□□□□□ -0.58
SPT20	YOL148C	POL32	P47110	350 aa		11.44	□□□□□ -0.58
SPT20	YOL148C	DAL5	P15365	543 aa		11.44	□□□□□ -0.58
SPT20	YOL148C	FKH1	P40466	484 aa		11.44	□□□□□ -0.58
SPT20	YOL148C	SAP155	P43612	1002 aa		11.44	□□□□□ -0.58
SPT20	YOL148C	YIL092W	P40497	633 aa		11.43	□□□□□ -0.58
SPT20	YOL148C	ITC1	P53125	1264 aa		11.43	□□□□□ -0.58
SPT20	YOL148C	BNR1	P40450	1375 aa		11.43	□□□□□ -0.58
SPT20	YOL148C	RTR1	P40084	226 aa	Predicted RBP	11.42	□□□□□ -0.58
SPT20	YOL148C	COG8	Q04632	607 aa		11.42	□□□□□ -0.58
SPT20	YOL148C	HAP1	P0CE41	1502 aa		11.41	□□□□□ -0.58
SPT20	YOL148C	VMR1	P38735	1592 aa		11.4	□□□□□ -0.58
SPT20	YOL148C	CHZ1	P40019	153 aa	Predicted RBP	11.39	□□□□□ -0.59
SPT20	YOL148C	LCD1	Q04377	747 aa		11.38	□□□□□ -0.59
SPT20	YOL148C	NUP192	P47054	1683 aa		11.36	□□□□□ -0.59
SPT20	YOL148C	TPD3	P31383	635 aa		11.36	□□□□□ -0.59
SPT20	YOL148C	IML1	P47170	1584 aa		11.36	□□□□□ -0.59
SPT20	YOL148C	KRE5	P22023	1365 aa		11.36	□□□□□ -0.59
SPT20	YOL148C	PIL1	P53252	339 aa	Known RBP	11.35	□□□□□ -0.59
SPT20	YOL148C	HAP5	Q02516	242 aa		11.35	□□□□□ -0.59
SPT20	YOL148C	PUF6	Q04373	656 aa	Known RBP	11.35	□□□□□ -0.59
SPT20	YOL148C	ESC2	Q06340	456 aa		11.35	□□□□□ -0.59
SPT20	YOL148C	SRS2	P12954	1174 aa		11.35	□□□□□ -0.59
SPT20	YOL148C	TPM2	P40414	161 aa		11.34	□□□□□ -0.59
SPT20	YOL148C	RSC1	P53236	928 aa		11.34	□□□□□ -0.59
SPT20	YOL148C	RRP46	P53256	223 aa	Predicted RBP	11.33	□□□□□ -0.6
SPT20	YOL148C	MAK21	Q12176	1025 aa	Known RBP	11.33	□□□□□ -0.6
SPT20	YOL148C	YRF1-4	O13559	1382 aa		11.32	□□□□□ -0.6
SPT20	YOL148C	YML133C	Q03099	1374 aa		11.32	□□□□□ -0.6
SPT20	YOL148C	YLL067C	Q07888	1374 aa		11.32	□□□□□ -0.6
SPT20	YOL148C	YLL066C	Q99208	1374 aa		11.32	□□□□□ -0.6
SPT20	YOL148C	YAP3	P38749	330 aa		11.31	□□□□□ -0.6
SPT20	YOL148C	ECM16	Q04217	1267 aa	Known RBP	11.31	□□□□□ -0.6
SPT20	YOL148C	SEC7	P11075	2009 aa	Known RBP	11.31	□□□□□ -0.6
SPT20	YOL148C	NOP53	Q12080	455 aa	Known RBP	11.3	□□□□□ -0.6
SPT20	YOL148C	MET5	P47169	1442 aa		11.3	□□□□□ -0.6
SPT20	YOL148C	RPN1	P38764	993 aa	Known RBP	11.3	□□□□□ -0.6
SPT20	YOL148C	SMC3	P47037	1230 aa		11.3	□□□□□ -0.6
SPT20	YOL148C	TAF8	Q03750	510 aa		11.3	□□□□□ -0.6
SPT20	YOL148C	THI22	Q06490	572 aa		11.3	□□□□□ -0.6
SPT20	YOL148C	PRD1	P25375	712 aa		11.29	□□□□□ -0.6
SPT20	YOL148C	SIR4	P11978	1358 aa		11.29	□□□□□ -0.6
SPT20	YOL148C	MDG1	P53885	366 aa		11.28	□□□□□ -0.6
SPT20	YOL148C	RAD26	P40352	1085 aa		11.28	□□□□□ -0.6
SPT20	YOL148C	HEF3	P53978	1044 aa	Known RBP	11.28	□□□□□ -0.6
SPT20	YOL148C	RKM3	P38222	552 aa		11.27	□□□□□ -0.61
SPT20	YOL148C	CSE4	P36012	229 aa		11.26	□□□□□ -0.61
SPT20	YOL148C	TCD1	P38756	429 aa		11.26	□□□□□ -0.61
SPT20	YOL148C	RNA1	P11745	407 aa	Known RBP	11.25	□□□□□ -0.61
SPT20	YOL148C	SPT21	P35209	758 aa		11.25	□□□□□ -0.61
SPT20	YOL148C	RIX1	P38883	763 aa	Predicted RBP	11.25	□□□□□ -0.61
SPT20	YOL148C	KAR2	P16474	682 aa	Known RBP	11.24	□□□□□ -0.61
SPT20	YOL148C	MIC60	P36112	540 aa		11.24	□□□□□ -0.61
SPT20	YOL148C	NUP145	P49687	1317 aa		11.24	□□□□□ -0.61
SPT20	YOL148C	MCM2	P29469	868 aa		11.23	□□□□□ -0.61
SPT20	YOL148C	HOS3	Q02959	697 aa	Known RBP	11.23	□□□□□ -0.61
SPT20	YOL148C	BDH2	P39713	417 aa		11.23	□□□□□ -0.61
SPT20	YOL148C	RRT14	P40470	206 aa		11.23	□□□□□ -0.61
SPT20	YOL148C	NUP188	P52593	1655 aa	Known RBP	11.23	□□□□□ -0.61
SPT20	YOL148C	ROM2	P51862	1356 aa	Known RBP	11.21	□□□□□ -0.62
SPT20	YOL148C	RAD50	P12753	1312 aa		11.21	□□□□□ -0.62
SPT20	YOL148C	RPN12	P32496	274 aa		11.21	□□□□□ -0.62
SPT20	YOL148C	YRF1-1	P0CX20	1796 aa		11.2	□□□□□ -0.62
SPT20	YOL148C	YRF1-5	P0CX21	1796 aa		11.2	□□□□□ -0.62
SPT20	YOL148C	YRF1-8	P0CX22	1796 aa		11.2	□□□□□ -0.62
SPT20	YOL148C	DLD1	P32891	587 aa		11.2	□□□□□ -0.62
SPT20	YOL148C	RTT109	Q07794	436 aa		11.2	□□□□□ -0.62
SPT20	YOL148C	CIR1	P42940	261 aa		11.19	□□□□□ -0.62
SPT20	YOL148C	PAP2	P53632	584 aa	Known RBP	11.19	□□□□□ -0.62
SPT20	YOL148C	HST1	P53685	503 aa		11.19	□□□□□ -0.62
SPT20	YOL148C	LTV1	P34078	463 aa		11.19	□□□□□ -0.62
SPT20	YOL148C	RSM25	P40496	264 aa		11.19	□□□□□ -0.62
SPT20	YOL148C	DNF3	Q12674	1656 aa		11.18	□□□□□ -0.62
SPT20	YOL148C	TRP5	P00931	707 aa	Known RBP	11.18	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 44.4 ms