RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W YLL067CQ07888 1374 aa13.46□□□□□ -0.25
SHH4YLR164W YLL066CQ99208 1374 aa13.46□□□□□ -0.25
SHH4YLR164W CPS1P27614 576 aa13.45□□□□□ -0.26
SHH4YLR164W PDS5Q04264 1277 aa13.43□□□□□ -0.26
SHH4YLR164W PSK1P31374 1356 aa13.43□□□□□ -0.26
SHH4YLR164W NST1P53935 1240 aa13.42□□□□□ -0.26
SHH4YLR164W RTG3P38165 486 aa13.4□□□□□ -0.26
SHH4YLR164W SPT7P35177 1332 aa13.39□□□□□ -0.27
SHH4YLR164W FKH1P40466 484 aa13.39□□□□□ -0.27
SHH4YLR164W PSD2P53037 1138 aaKnown RBP13.38□□□□□ -0.27
SHH4YLR164W ADE6P38972 1358 aaKnown RBP13.31□□□□□ -0.28
SHH4YLR164W LEU3P08638 886 aa13.3□□□□□ -0.28
SHH4YLR164W PTP3P40048 928 aa13.29□□□□□ -0.28
SHH4YLR164W MLP1Q02455 1875 aaKnown RBP13.28□□□□□ -0.28
SHH4YLR164W SEC3P33332 1336 aaKnown RBP13.28□□□□□ -0.28
SHH4YLR164W LEU2P04173 364 aaPredicted RBP13.27□□□□□ -0.29
SHH4YLR164W SCT1P32784 759 aa13.26□□□□□ -0.29
SHH4YLR164W TY4B-HP0C2J7 1802 aa13.25□□□□□ -0.29
SHH4YLR164W TY4B-JP47024 1803 aa13.25□□□□□ -0.29
SHH4YLR164W YEF3P16521 1044 aaKnown RBP13.25□□□□□ -0.29
SHH4YLR164W RPS24AP0CX31 135 aaKnown RBP13.23□□□□□ -0.29
SHH4YLR164W RPS24BP0CX32 135 aaKnown RBP13.23□□□□□ -0.29
SHH4YLR164W MTR4P47047 1073 aaKnown RBP13.22□□□□□ -0.29
SHH4YLR164W PRP43P53131 767 aaKnown RBP13.21□□□□□ -0.29
SHH4YLR164W TRK1P12685 1235 aa13.2□□□□□ -0.3
SHH4YLR164W CSE4P36012 229 aa13.2□□□□□ -0.3
SHH4YLR164W AUS1Q08409 1394 aa13.2□□□□□ -0.3
SHH4YLR164W NSR1P27476 414 aaKnown RBP RIP-Chip data13.16□□□□□ -0.3not detected
SHH4YLR164W HIM1Q06674 414 aa13.16□□□□□ -0.3
SHH4YLR164W RRP5Q05022 1729 aaKnown RBP13.16□□□□□ -0.3
SHH4YLR164W PRP45P28004 379 aaPredicted RBP13.14□□□□□ -0.31
SHH4YLR164W YIL177CP40434 1758 aa13.14□□□□□ -0.31
SHH4YLR164W YJL225CP40889 1758 aa13.14□□□□□ -0.31
SHH4YLR164W PDI1P17967 522 aaKnown RBP13.13□□□□□ -0.31
SHH4YLR164W REB1P21538 810 aa13.13□□□□□ -0.31
SHH4YLR164W APP1P53933 587 aa13.13□□□□□ -0.31
SHH4YLR164W TAP42Q04372 366 aa13.12□□□□□ -0.31
SHH4YLR164W GAS4Q08271 471 aa13.12□□□□□ -0.31
SHH4YLR164W YRF1-2P40105 1681 aa13.12□□□□□ -0.31
SHH4YLR164W PRP5P21372 849 aaPredicted RBP13.11□□□□□ -0.31
SHH4YLR164W MSB3P48566 633 aaPredicted RBP13.11□□□□□ -0.31
SHH4YLR164W ENP1P38333 483 aaKnown RBP13.1□□□□□ -0.31
SHH4YLR164W DPS1P04802 557 aaKnown RBP13.08□□□□□ -0.32
SHH4YLR164W ENT1Q12518 454 aa13.08□□□□□ -0.32
SHH4YLR164W RRP46P53256 223 aaPredicted RBP13.07□□□□□ -0.32
SHH4YLR164W RTF1P53064 558 aa13.06□□□□□ -0.32
SHH4YLR164W YAH1Q12184 172 aaKnown RBP13.06□□□□□ -0.32
SHH4YLR164W KAR2P16474 682 aaKnown RBP13.05□□□□□ -0.32
SHH4YLR164W SLM3Q12093 417 aa13.04□□□□□ -0.32
SHH4YLR164W GRX4P32642 244 aa13.03□□□□□ -0.32
SHH4YLR164W ENV9Q08651 330 aa13.02□□□□□ -0.33
SHH4YLR164W URB1P34241 1764 aaKnown RBP12.98□□□□□ -0.33
SHH4YLR164W BUB1P41695 1021 aaKnown RBP RIP-Chip data12.97□□□□□ -0.33not detected
SHH4YLR164W RPO41P13433 1351 aaKnown RBP12.96□□□□□ -0.33
SHH4YLR164W PAP2P53632 584 aaKnown RBP12.96□□□□□ -0.33
SHH4YLR164W TCB1Q12466 1186 aa12.96□□□□□ -0.33
SHH4YLR164W XKS1P42826 600 aa12.95□□□□□ -0.34
SHH4YLR164W SNF2P22082 1703 aa12.95□□□□□ -0.34
SHH4YLR164W APC1P53886 1748 aa12.94□□□□□ -0.34
SHH4YLR164W PRS1P32895 427 aaKnown RBP12.94□□□□□ -0.34
SHH4YLR164W FKS3Q04952 1785 aa12.94□□□□□ -0.34
SHH4YLR164W RSF2P46974 1380 aa12.94□□□□□ -0.34
SHH4YLR164W IOC4Q04213 475 aa12.93□□□□□ -0.34
SHH4YLR164W MPP10P47083 593 aaKnown RBP12.92□□□□□ -0.34
SHH4YLR164W YRF1-4O13559 1382 aa12.92□□□□□ -0.34
SHH4YLR164W RTR1P40084 226 aaPredicted RBP12.91□□□□□ -0.34
SHH4YLR164W IMH1Q06704 911 aaKnown RBP12.9□□□□□ -0.34
SHH4YLR164W YDL144CQ07589 356 aa12.9□□□□□ -0.34
SHH4YLR164W IES2P40154 320 aa12.89□□□□□ -0.35
SHH4YLR164W AKL1P38080 1108 aaKnown RBP12.88□□□□□ -0.35
SHH4YLR164W RCR1P38212 213 aa12.88□□□□□ -0.35
SHH4YLR164W DSD1P53095 428 aa12.87□□□□□ -0.35
SHH4YLR164W THI22Q06490 572 aa12.87□□□□□ -0.35
SHH4YLR164W YRF1-3P0CX14 1859 aa12.87□□□□□ -0.35
SHH4YLR164W YRF1-7P0CX15 1859 aa12.87□□□□□ -0.35
SHH4YLR164W YRF1-6P53819 1859 aa12.87□□□□□ -0.35
SHH4YLR164W PRD1P25375 712 aa12.86□□□□□ -0.35
SHH4YLR164W YIL055CP40523 627 aaKnown RBP12.86□□□□□ -0.35
SHH4YLR164W SIR4P11978 1358 aa12.83□□□□□ -0.36
SHH4YLR164W SUI2P20459 304 aaKnown RBP12.83□□□□□ -0.36
SHH4YLR164W HSP104P31539 908 aaKnown RBP12.81□□□□□ -0.36
SHH4YLR164W NTH2P35172 780 aa12.8□□□□□ -0.36
SHH4YLR164W DOT5P40553 215 aa12.8□□□□□ -0.36
SHH4YLR164W SAP155P43612 1002 aa12.8□□□□□ -0.36
SHH4YLR164W ADE16P54113 591 aaKnown RBP12.8□□□□□ -0.36
SHH4YLR164W RPP0P05317 312 aaKnown RBP12.79□□□□□ -0.36
SHH4YLR164W YKL133CP36066 463 aa12.79□□□□□ -0.36
SHH4YLR164W VPS27P40343 622 aaKnown RBP12.79□□□□□ -0.36
SHH4YLR164W HEF3P53978 1044 aaKnown RBP12.79□□□□□ -0.36
SHH4YLR164W RTT109Q07794 436 aa12.79□□□□□ -0.36
SHH4YLR164W INP54Q08227 384 aaKnown RBP12.78□□□□□ -0.36
SHH4YLR164W FOX2Q02207 900 aaKnown RBP12.77□□□□□ -0.37
SHH4YLR164W RVB2Q12464 471 aaKnown RBP12.77□□□□□ -0.37
SHH4YLR164W TPD3P31383 635 aa12.76□□□□□ -0.37
SHH4YLR164W FRK1Q03002 865 aaPredicted RBP12.76□□□□□ -0.37
SHH4YLR164W NUP145P49687 1317 aa12.75□□□□□ -0.37
SHH4YLR164W CDC45Q08032 650 aa12.75□□□□□ -0.37
SHH4YLR164W FUN12P39730 1002 aaKnown RBP12.74□□□□□ -0.37
SHH4YLR164W ROM2P51862 1356 aaKnown RBP12.73□□□□□ -0.37
SHH4YLR164W GLN1P32288 370 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms