RNA–Protein interactions for RNA: YDR108W

TRS85, Transcript of Component of transport protein particle (TRAPP) complex III, yeastyeast

Gene TRS85, Length 2,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRS85YDR108W NMD2P38798 1089 aaKnown RBP5.16□□□□□ -1.58
TRS85YDR108W XRN1P22147 1528 aaKnown RBP5.15□□□□□ -1.58
TRS85YDR108W YTA7P40340 1379 aa5.15□□□□□ -1.58
TRS85YDR108W IFH1P39520 1085 aa5.15□□□□□ -1.59
TRS85YDR108W PTC2P39966 464 aaKnown RBP5.15□□□□□ -1.59
TRS85YDR108W YPR015CQ12531 247 aa5.14□□□□□ -1.59
TRS85YDR108W DPL1Q05567 589 aa5.13□□□□□ -1.59
TRS85YDR108W PLP2Q12017 286 aa5.13□□□□□ -1.59
TRS85YDR108W INO80P53115 1489 aa5.12□□□□□ -1.59
TRS85YDR108W RLP24Q07915 199 aaKnown RBP5.12□□□□□ -1.59
TRS85YDR108W KEX1P09620 729 aa5.11□□□□□ -1.59
TRS85YDR108W YNL011CP53980 444 aa5.11□□□□□ -1.59
TRS85YDR108W NOP58Q12499 511 aaKnown RBP5.11□□□□□ -1.59
TRS85YDR108W IKI3Q06706 1349 aaKnown RBP5.11□□□□□ -1.59
TRS85YDR108W RAM1P22007 431 aa5.11□□□□□ -1.59
TRS85YDR108W RAD26P40352 1085 aa5.11□□□□□ -1.59
TRS85YDR108W TRM732Q03496 1420 aa5.1□□□□□ -1.59
TRS85YDR108W MON2P48563 1636 aaPredicted RBP5.1□□□□□ -1.59
TRS85YDR108W ROX1P25042 368 aa5.1□□□□□ -1.59
TRS85YDR108W CTR9P89105 1077 aa5.09□□□□□ -1.59
TRS85YDR108W PIL1P53252 339 aaKnown RBP5.09□□□□□ -1.59
TRS85YDR108W TOP2P06786 1428 aaKnown RBP5.09□□□□□ -1.6
TRS85YDR108W RPN1P38764 993 aaKnown RBP5.08□□□□□ -1.6
TRS85YDR108W SMC3P47037 1230 aa5.08□□□□□ -1.6
TRS85YDR108W SWE1P32944 819 aa5.08□□□□□ -1.6
TRS85YDR108W VPS4P52917 437 aa5.08□□□□□ -1.6
TRS85YDR108W CDC73Q06697 393 aa5.08□□□□□ -1.6
TRS85YDR108W RAS1P01119 309 aa5.07□□□□□ -1.6
TRS85YDR108W YLR326WQ06170 240 aaKnown RBP5.07□□□□□ -1.6
TRS85YDR108W BUD4P47136 1447 aa5.07□□□□□ -1.6
TRS85YDR108W UBP14P38237 781 aaKnown RBP5.06□□□□□ -1.6
TRS85YDR108W MSH4P40965 878 aaPredicted RBP5.06□□□□□ -1.6
TRS85YDR108W SRB8P25648 1427 aa5.06□□□□□ -1.6
TRS85YDR108W SET1P38827 1080 aaKnown RBP5.06□□□□□ -1.6
TRS85YDR108W SLN1P39928 1220 aaPredicted RBP5.06□□□□□ -1.6
TRS85YDR108W DOS2P54858 310 aa5.06□□□□□ -1.6
TRS85YDR108W GRX3Q03835 250 aa5.06□□□□□ -1.6
TRS85YDR108W ISU2Q12056 156 aa5.06□□□□□ -1.6
TRS85YDR108W MSH3P25336 1018 aa5.05□□□□□ -1.6
TRS85YDR108W YPP1P46951 817 aa5.05□□□□□ -1.6
TRS85YDR108W ETT1Q08421 412 aaKnown RBP5.05□□□□□ -1.6
TRS85YDR108W MMS1Q06211 1407 aa5.05□□□□□ -1.6
TRS85YDR108W RTT106P40161 455 aa5.04□□□□□ -1.6
TRS85YDR108W NNF2P53253 936 aa5.04□□□□□ -1.6
TRS85YDR108W PCS60P38137 543 aaKnown RBP RIP-Chip data5.04□□□□□ -1.6 RIP-Chip
TRS85YDR108W SIC1P38634 284 aa5.04□□□□□ -1.6
TRS85YDR108W PEP1P32319 1579 aa5.03□□□□□ -1.6
TRS85YDR108W PDR1P12383 1068 aa5.03□□□□□ -1.6
TRS85YDR108W VHR2P40041 505 aa5.03□□□□□ -1.6
TRS85YDR108W ORC1P54784 914 aaPredicted RBP5.03□□□□□ -1.6
TRS85YDR108W SDH2P21801 266 aa5.02□□□□□ -1.61
TRS85YDR108W CLB5P30283 435 aa5.02□□□□□ -1.61
TRS85YDR108W DJP1P40564 432 aa5.02□□□□□ -1.61
TRS85YDR108W DSN1P40568 576 aa5.02□□□□□ -1.61
TRS85YDR108W PRP3Q03338 469 aaPredicted RBP5.02□□□□□ -1.61
TRS85YDR108W SSM4P40318 1319 aa5.01□□□□□ -1.61
TRS85YDR108W YIR014WP40570 242 aa5.01□□□□□ -1.61
TRS85YDR108W YLR419WQ06698 1435 aaKnown RBP5.01□□□□□ -1.61
TRS85YDR108W NOT3P06102 836 aaKnown RBP5.01□□□□□ -1.61
TRS85YDR108W LTV1P34078 463 aa5.01□□□□□ -1.61
TRS85YDR108W BYE1P36106 594 aa5□□□□□ -1.61
TRS85YDR108W ECM16Q04217 1267 aaKnown RBP5□□□□□ -1.61
TRS85YDR108W SNU71P53207 620 aaKnown RBP5□□□□□ -1.61
TRS85YDR108W PDR10P51533 1564 aa4.99□□□□□ -1.61
TRS85YDR108W RPS0AP32905 252 aaKnown RBP4.99□□□□□ -1.61
TRS85YDR108W TAN1P53072 289 aaPredicted RBP4.99□□□□□ -1.61
TRS85YDR108W RPN7Q06103 429 aaKnown RBP4.98□□□□□ -1.61
TRS85YDR108W YSH1Q06224 779 aaPredicted RBP4.98□□□□□ -1.61
TRS85YDR108W GYP1Q08484 637 aa4.98□□□□□ -1.61
TRS85YDR108W CBF5P33322 483 aaKnown RBP RIP-Chip data4.98□□□□□ -1.61not detected
TRS85YDR108W YDR090CQ03193 310 aa4.98□□□□□ -1.61
TRS85YDR108W MYO4P32492 1471 aa4.98□□□□□ -1.61
TRS85YDR108W EDE1P34216 1381 aa4.97□□□□□ -1.61
TRS85YDR108W AMS1P22855 1083 aa4.97□□□□□ -1.61
TRS85YDR108W RAD54P32863 898 aa4.97□□□□□ -1.61
TRS85YDR108W RGA2Q06407 1009 aa4.97□□□□□ -1.61
TRS85YDR108W NOP8Q08287 484 aaPredicted RBP4.97□□□□□ -1.61
TRS85YDR108W BMS1Q08965 1183 aaKnown RBP4.97□□□□□ -1.61
TRS85YDR108W MED8P38304 223 aa4.96□□□□□ -1.61
TRS85YDR108W MDG1P53885 366 aa4.96□□□□□ -1.61
TRS85YDR108W PCT1P13259 424 aa4.96□□□□□ -1.62
TRS85YDR108W KNS1P32350 737 aaPredicted RBP4.96□□□□□ -1.62
TRS85YDR108W MSP1P28737 362 aa4.95□□□□□ -1.62
TRS85YDR108W ECM1P39715 212 aa4.95□□□□□ -1.62
TRS85YDR108W YPK9Q12697 1472 aa4.95□□□□□ -1.62
TRS85YDR108W SMC4Q12267 1418 aa4.95□□□□□ -1.62
TRS85YDR108W TOP1P04786 769 aa4.95□□□□□ -1.62
TRS85YDR108W SRP54P20424 541 aaKnown RBP4.95□□□□□ -1.62
TRS85YDR108W ARL1P38116 183 aaKnown RBP4.95□□□□□ -1.62
TRS85YDR108W RGA1P39083 1007 aa4.95□□□□□ -1.62
TRS85YDR108W CLB1P24868 471 aa4.94□□□□□ -1.62
TRS85YDR108W VPS24P36095 224 aaKnown RBP4.94□□□□□ -1.62
TRS85YDR108W SAP190P36123 1033 aa4.94□□□□□ -1.62
TRS85YDR108W TPM2P40414 161 aa4.94□□□□□ -1.62
TRS85YDR108W SPT6P23615 1451 aaKnown RBP4.94□□□□□ -1.62
TRS85YDR108W CHZ1P40019 153 aaPredicted RBP4.93□□□□□ -1.62
TRS85YDR108W PAP2P53632 584 aaKnown RBP4.93□□□□□ -1.62
TRS85YDR108W SAS4Q04003 481 aa4.93□□□□□ -1.62
TRS85YDR108W THO2P53552 1597 aaKnown RBP4.93□□□□□ -1.62
TRS85YDR108W GAP1P19145 602 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 5,963 RNA–protein pairs in 52.2 ms