RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W NUP42P49686 430 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W STS1P38637 319 aa1.85□□□□□ -2.11
CDC39YCR093W SAS4Q04003 481 aa1.85□□□□□ -2.11
CDC39YCR093W SPA2P23201 1466 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W SLY41P22215 453 aa1.84□□□□□ -2.11
CDC39YCR093W SET4P42948 560 aa1.84□□□□□ -2.11
CDC39YCR093W YJL007CP47080 104 aa1.84□□□□□ -2.11
CDC39YCR093W MRX12P47084 519 aa1.84□□□□□ -2.11
CDC39YCR093W NAF1P53919 492 aaKnown RBP1.84□□□□□ -2.11
CDC39YCR093W DIT2P21595 489 aa1.84□□□□□ -2.11
CDC39YCR093W GUT2P32191 649 aa1.84□□□□□ -2.11
CDC39YCR093W KXD1P53158 218 aa1.84□□□□□ -2.11
CDC39YCR093W YLR326WQ06170 240 aaKnown RBP1.84□□□□□ -2.11
CDC39YCR093W NCR1Q12200 1170 aa1.84□□□□□ -2.11
CDC39YCR093W RTG2P32608 588 aaKnown RBP1.84□□□□□ -2.11
CDC39YCR093W HST2P53686 357 aa1.84□□□□□ -2.11
CDC39YCR093W DLD3P39976 496 aaKnown RBP1.84□□□□□ -2.12
CDC39YCR093W MVP1P40959 511 aaKnown RBP1.83□□□□□ -2.12
CDC39YCR093W KIP2P28743 706 aa1.83□□□□□ -2.12
CDC39YCR093W PCS60P38137 543 aaKnown RBP RIP-Chip data1.83□□□□□ -2.12not detected
CDC39YCR093W RCR1P38212 213 aa1.83□□□□□ -2.12
CDC39YCR093W ORC6P38826 435 aa1.83□□□□□ -2.12
CDC39YCR093W BMT6Q12291 365 aa1.83□□□□□ -2.12
CDC39YCR093W MST1P07236 462 aa1.83□□□□□ -2.12
CDC39YCR093W HAP4P14064 554 aa1.83□□□□□ -2.12
CDC39YCR093W DAN4P47179 1161 aa1.83□□□□□ -2.12
CDC39YCR093W HAP5Q02516 242 aa1.83□□□□□ -2.12
CDC39YCR093W SEC20P28791 383 aa1.83□□□□□ -2.12
CDC39YCR093W YRR1Q12172 810 aa1.83□□□□□ -2.12
CDC39YCR093W GUA1P38625 525 aaKnown RBP1.82□□□□□ -2.12
CDC39YCR093W UTP13Q05946 817 aaKnown RBP1.82□□□□□ -2.12
CDC39YCR093W YPR109WQ06104 294 aa1.82□□□□□ -2.12
CDC39YCR093W ALR1Q08269 859 aa1.82□□□□□ -2.12
CDC39YCR093W TEC1P18412 486 aa1.82□□□□□ -2.12
CDC39YCR093W YPR204WQ08995 1032 aa1.82□□□□□ -2.12
CDC39YCR093W YEL077CQ3E7X8 1277 aa1.82□□□□□ -2.12
CDC39YCR093W RAD59Q12223 238 aa1.82□□□□□ -2.12
CDC39YCR093W TRS33Q99394 268 aa1.82□□□□□ -2.12
CDC39YCR093W SNU71P53207 620 aaKnown RBP1.82□□□□□ -2.12
CDC39YCR093W NAB2P32505 525 aaKnown RBP RIP-Chip data1.82□□□□□ -2.12not detected
CDC39YCR093W MAK16P10962 306 aaPredicted RBP1.81□□□□□ -2.12
CDC39YCR093W TBS1P38114 1094 aa1.81□□□□□ -2.12
CDC39YCR093W SLI15P38283 698 aa1.81□□□□□ -2.12
CDC39YCR093W PML39Q03760 334 aa1.81□□□□□ -2.12
CDC39YCR093W SVF1Q05515 481 aa1.81□□□□□ -2.12
CDC39YCR093W INO80P53115 1489 aa1.81□□□□□ -2.12
CDC39YCR093W IXR1P33417 597 aa1.81□□□□□ -2.12
CDC39YCR093W EDS1P38073 919 aa1.81□□□□□ -2.12
CDC39YCR093W BIM1P40013 344 aa1.81□□□□□ -2.12
CDC39YCR093W SLX8P40072 274 aa1.81□□□□□ -2.12
CDC39YCR093W PHO87P25360 923 aa1.81□□□□□ -2.12
CDC39YCR093W YDR090CQ03193 310 aa1.81□□□□□ -2.12
CDC39YCR093W LDB19Q12502 818 aa1.81□□□□□ -2.12
CDC39YCR093W PUF6Q04373 656 aaKnown RBP1.81□□□□□ -2.12
CDC39YCR093W SNF7P39929 240 aaKnown RBP1.8□□□□□ -2.12
CDC39YCR093W RPA14P50106 137 aa1.8□□□□□ -2.12
CDC39YCR093W FUR4P05316 633 aaKnown RBP1.8□□□□□ -2.12
CDC39YCR093W VNX1P42839 908 aa1.8□□□□□ -2.12
CDC39YCR093W HST3P53687 447 aa1.8□□□□□ -2.12
CDC39YCR093W YBL029C-AQ3E756 94 aa1.8□□□□□ -2.12
CDC39YCR093W FPK1P53739 893 aa1.8□□□□□ -2.12
CDC39YCR093W SYH1Q02875 849 aaKnown RBP1.8□□□□□ -2.12
CDC39YCR093W RGR1P19263 1082 aa1.8□□□□□ -2.12
CDC39YCR093W ITT1Q04638 464 aa1.8□□□□□ -2.12
CDC39YCR093W TIF1P10081 395 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W NUD1P32336 851 aa1.79□□□□□ -2.12
CDC39YCR093W GCD11P32481 527 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W MGE1P38523 228 aa1.79□□□□□ -2.12
CDC39YCR093W ATG14P38270 344 aa1.79□□□□□ -2.12
CDC39YCR093W YNL108CP53929 270 aa1.79□□□□□ -2.12
CDC39YCR093W DAT1P13483 248 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W CHL1P22516 861 aaPredicted RBP1.79□□□□□ -2.12
CDC39YCR093W CDC3P32457 520 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W STM1P39015 273 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W ALA1P40825 983 aaKnown RBP1.79□□□□□ -2.12
CDC39YCR093W BNI4P53858 892 aa1.79□□□□□ -2.12
CDC39YCR093W NMA111P53920 997 aa1.79□□□□□ -2.12
CDC39YCR093W YLR346CQ06139 101 aa1.79□□□□□ -2.12
CDC39YCR093W OXR1Q08952 273 aa1.79□□□□□ -2.12
CDC39YCR093W YDL129WQ07555 291 aa1.79□□□□□ -2.12
CDC39YCR093W SRF1Q12516 437 aa1.79□□□□□ -2.12
CDC39YCR093W YTA6P40328 754 aa1.78□□□□□ -2.12
CDC39YCR093W PRT1P06103 763 aaKnown RBP1.78□□□□□ -2.12
CDC39YCR093W ESS1P22696 170 aa1.78□□□□□ -2.12
CDC39YCR093W ECM2P38241 364 aaKnown RBP1.78□□□□□ -2.12
CDC39YCR093W ARH1P48360 493 aa1.78□□□□□ -2.12
CDC39YCR093W TUM1Q08686 304 aaKnown RBP1.78□□□□□ -2.12
CDC39YCR093W CPS1P27614 576 aa1.78□□□□□ -2.12
CDC39YCR093W RRN7P40992 514 aa1.78□□□□□ -2.12
CDC39YCR093W HEM3P28789 327 aa1.78□□□□□ -2.13
CDC39YCR093W RSC2Q06488 889 aa1.78□□□□□ -2.13
CDC39YCR093W TRM1P15565 570 aaKnown RBP1.77□□□□□ -2.13
CDC39YCR093W GCR2Q01722 534 aa1.77□□□□□ -2.13
CDC39YCR093W SPR3P41901 512 aa1.77□□□□□ -2.13
CDC39YCR093W TYW1Q08960 810 aaKnown RBP1.77□□□□□ -2.13
CDC39YCR093W OSW7P43611 510 aa1.77□□□□□ -2.13
CDC39YCR093W NIS1P53939 407 aa1.77□□□□□ -2.13
CDC39YCR093W YML082WQ04533 649 aaKnown RBP1.77□□□□□ -2.13
CDC39YCR093W KAR5Q04746 504 aa1.77□□□□□ -2.13
CDC39YCR093W PUN1Q06991 263 aa1.77□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 40.2 ms