RNA–Protein interactions for RNA: YCR088W

ABP1, Transcript of Actin-binding protein of the cortical actin cytoskeleton, yeastyeast

Gene ABP1, Length 1,779 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ABP1YCR088W YDL144CQ07589 356 aa10.14□□□□□ -0.79
ABP1YCR088W CAB1Q04430 367 aa10.11□□□□□ -0.79
ABP1YCR088W YML133CQ03099 1374 aa10.11□□□□□ -0.79
ABP1YCR088W YLL067CQ07888 1374 aa10.11□□□□□ -0.79
ABP1YCR088W YLL066CQ99208 1374 aa10.11□□□□□ -0.79
ABP1YCR088W SNF2P22082 1703 aa10.11□□□□□ -0.79
ABP1YCR088W RPC31P17890 251 aa10.11□□□□□ -0.79
ABP1YCR088W SUI2P20459 304 aaKnown RBP10.11□□□□□ -0.79
ABP1YCR088W BNI1P41832 1953 aa10.1□□□□□ -0.79
ABP1YCR088W SCT1P32784 759 aa10.09□□□□□ -0.79
ABP1YCR088W MPP10P47083 593 aaKnown RBP10.08□□□□□ -0.8
ABP1YCR088W ITT1Q04638 464 aa10.08□□□□□ -0.8
ABP1YCR088W RRP46P53256 223 aaPredicted RBP10.06□□□□□ -0.8
ABP1YCR088W IME2P32581 645 aa10.04□□□□□ -0.8
ABP1YCR088W OPY1P38271 328 aa10.04□□□□□ -0.8
ABP1YCR088W IOC4Q04213 475 aa10.04□□□□□ -0.8
ABP1YCR088W PRI1P10363 409 aa10.02□□□□□ -0.81
ABP1YCR088W RPG1P38249 964 aaKnown RBP10.02□□□□□ -0.81
ABP1YCR088W URN1Q06525 465 aaKnown RBP10.02□□□□□ -0.81
ABP1YCR088W FPR3P38911 411 aaKnown RBP10.01□□□□□ -0.81
ABP1YCR088W YFR016CP43597 1233 aaKnown RBP10□□□□□ -0.81
ABP1YCR088W KRE5P22023 1365 aa9.98□□□□□ -0.81
ABP1YCR088W RTR1P40084 226 aaPredicted RBP9.98□□□□□ -0.81
ABP1YCR088W SAP155P43612 1002 aa9.98□□□□□ -0.81
ABP1YCR088W YRB30P53107 440 aaPredicted RBP9.98□□□□□ -0.81
ABP1YCR088W NAB6Q03735 1134 aaKnown RBP RIP-Chip data9.98□□□□□ -0.81not detected
ABP1YCR088W PPH3P32345 308 aa9.96□□□□□ -0.81
ABP1YCR088W RCM1P53972 490 aa9.96□□□□□ -0.81
ABP1YCR088W DNF3Q12674 1656 aa9.95□□□□□ -0.82
ABP1YCR088W NAP1P25293 417 aaKnown RBP9.95□□□□□ -0.82
ABP1YCR088W YPR148CQ06523 435 aa9.95□□□□□ -0.82
ABP1YCR088W HAP1P0CE41 1502 aa9.95□□□□□ -0.82
ABP1YCR088W THI22Q06490 572 aa9.94□□□□□ -0.82
ABP1YCR088W HIM1Q06674 414 aa9.94□□□□□ -0.82
ABP1YCR088W TPD3P31383 635 aa9.93□□□□□ -0.82
ABP1YCR088W KAR2P16474 682 aaKnown RBP9.92□□□□□ -0.82
ABP1YCR088W DAL5P15365 543 aa9.91□□□□□ -0.82
ABP1YCR088W PRD1P25375 712 aa9.91□□□□□ -0.82
ABP1YCR088W PSK1P31374 1356 aa9.91□□□□□ -0.82
ABP1YCR088W AUS1Q08409 1394 aa9.91□□□□□ -0.82
ABP1YCR088W YIL092WP40497 633 aa9.91□□□□□ -0.82
ABP1YCR088W HEF3P53978 1044 aaKnown RBP9.91□□□□□ -0.82
ABP1YCR088W ABP1P15891 592 aaKnown RBP9.9□□□□□ -0.82
ABP1YCR088W MRX12P47084 519 aa9.9□□□□□ -0.82
ABP1YCR088W RAD2P07276 1031 aa9.89□□□□□ -0.83
ABP1YCR088W RIA1P53893 1110 aa9.89□□□□□ -0.83
ABP1YCR088W CSE4P36012 229 aa9.88□□□□□ -0.83
ABP1YCR088W YIR014WP40570 242 aa9.88□□□□□ -0.83
ABP1YCR088W PAP2P53632 584 aaKnown RBP9.88□□□□□ -0.83
ABP1YCR088W RTT109Q07794 436 aa9.88□□□□□ -0.83
ABP1YCR088W TY1B-NL2Q99337 1749 aaKnown RBP9.88□□□□□ -0.83
ABP1YCR088W USO1P25386 1790 aa9.87□□□□□ -0.83
ABP1YCR088W CLC1P17891 233 aa9.87□□□□□ -0.83
ABP1YCR088W TAP42Q04372 366 aa9.87□□□□□ -0.83
ABP1YCR088W POL32P47110 350 aa9.86□□□□□ -0.83
ABP1YCR088W PDI1P17967 522 aaKnown RBP9.85□□□□□ -0.83
ABP1YCR088W AAD16Q02895 342 aa9.85□□□□□ -0.83
ABP1YCR088W LEU2P04173 364 aaPredicted RBP9.83□□□□□ -0.84
ABP1YCR088W CPS1P27614 576 aa9.83□□□□□ -0.84
ABP1YCR088W EAF7P53911 425 aaKnown RBP9.83□□□□□ -0.84
ABP1YCR088W SIR4P11978 1358 aa9.8□□□□□ -0.84
ABP1YCR088W PUF6Q04373 656 aaKnown RBP9.8□□□□□ -0.84
ABP1YCR088W BUD27P43573 796 aaKnown RBP RIP-Chip data9.79□□□□□ -0.84not detected
ABP1YCR088W PCT1P13259 424 aa9.78□□□□□ -0.84
ABP1YCR088W GRX4P32642 244 aa9.78□□□□□ -0.84
ABP1YCR088W MTR4P47047 1073 aaKnown RBP9.78□□□□□ -0.84
ABP1YCR088W GAS4Q08271 471 aa9.78□□□□□ -0.84
ABP1YCR088W SNF7P39929 240 aaKnown RBP9.78□□□□□ -0.84
ABP1YCR088W RPS24AP0CX31 135 aaKnown RBP9.77□□□□□ -0.85
ABP1YCR088W RPS24BP0CX32 135 aaKnown RBP9.77□□□□□ -0.85
ABP1YCR088W RTF1P53064 558 aa9.77□□□□□ -0.85
ABP1YCR088W DJP1P40564 432 aa9.76□□□□□ -0.85
ABP1YCR088W YNR029CP53729 429 aaKnown RBP9.76□□□□□ -0.85
ABP1YCR088W BUB1P41695 1021 aaKnown RBP RIP-Chip data9.75□□□□□ -0.85not detected
ABP1YCR088W ILV3P39522 585 aaKnown RBP9.75□□□□□ -0.85
ABP1YCR088W MAK21Q12176 1025 aaKnown RBP9.75□□□□□ -0.85
ABP1YCR088W RPO41P13433 1351 aaKnown RBP9.74□□□□□ -0.85
ABP1YCR088W TRP5P00931 707 aaKnown RBP9.73□□□□□ -0.85
ABP1YCR088W ROX1P25042 368 aa9.73□□□□□ -0.85
ABP1YCR088W YIL177CP40434 1758 aa9.73□□□□□ -0.85
ABP1YCR088W YJL225CP40889 1758 aa9.73□□□□□ -0.85
ABP1YCR088W YRF1-4O13559 1382 aa9.72□□□□□ -0.85
ABP1YCR088W APC1P53886 1748 aa9.72□□□□□ -0.85
ABP1YCR088W DPS1P04802 557 aaKnown RBP9.72□□□□□ -0.85
ABP1YCR088W DSD1P53095 428 aa9.72□□□□□ -0.85
ABP1YCR088W MAK10Q02197 733 aa9.72□□□□□ -0.85
ABP1YCR088W RRP5Q05022 1729 aaKnown RBP9.72□□□□□ -0.85
ABP1YCR088W RPL17AP05740 184 aaKnown RBP9.71□□□□□ -0.85
ABP1YCR088W AKL1P38080 1108 aaKnown RBP9.71□□□□□ -0.85
ABP1YCR088W RPL17BP46990 184 aaKnown RBP9.71□□□□□ -0.85
ABP1YCR088W ADE6P38972 1358 aaKnown RBP9.71□□□□□ -0.85
ABP1YCR088W TY4B-HP0C2J7 1802 aa9.71□□□□□ -0.86
ABP1YCR088W TY4B-JP47024 1803 aa9.71□□□□□ -0.86
ABP1YCR088W PRP43P53131 767 aaKnown RBP9.7□□□□□ -0.86
ABP1YCR088W RRT14P40470 206 aa9.69□□□□□ -0.86
ABP1YCR088W RLF2Q12495 606 aa9.69□□□□□ -0.86
ABP1YCR088W SLN1P39928 1220 aaPredicted RBP9.67□□□□□ -0.86
ABP1YCR088W GYP7P48365 746 aa9.67□□□□□ -0.86
ABP1YCR088W YBR287WP38355 427 aa9.66□□□□□ -0.86
ABP1YCR088W SRT1Q03175 343 aa9.66□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms