RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	THI13	Q07748	340 aa		18.87	■□□□□ 0.61
DEP1	YAL013W	RCM1	P53972	490 aa		18.84	■□□□□ 0.61
DEP1	YAL013W	PPH3	P32345	308 aa		18.83	■□□□□ 0.6
DEP1	YAL013W	YML133C	Q03099	1374 aa		18.81	■□□□□ 0.6
DEP1	YAL013W	YLL067C	Q07888	1374 aa		18.81	■□□□□ 0.6
DEP1	YAL013W	YLL066C	Q99208	1374 aa		18.81	■□□□□ 0.6
DEP1	YAL013W	CPS1	P27614	576 aa		18.81	■□□□□ 0.6
DEP1	YAL013W	FKH1	P40466	484 aa		18.81	■□□□□ 0.6
DEP1	YAL013W	SPT7	P35177	1332 aa		18.79	■□□□□ 0.6
DEP1	YAL013W	YFR006W	P43590	535 aa		18.74	■□□□□ 0.59
DEP1	YAL013W	RTG3	P38165	486 aa		18.72	■□□□□ 0.59
DEP1	YAL013W	PSD2	P53037	1138 aa	Known RBP	18.72	■□□□□ 0.59
DEP1	YAL013W	ADE6	P38972	1358 aa	Known RBP	18.67	■□□□□ 0.58
DEP1	YAL013W	TY4B-H	P0C2J7	1802 aa		18.65	■□□□□ 0.58
DEP1	YAL013W	TY4B-J	P47024	1803 aa		18.65	■□□□□ 0.58
DEP1	YAL013W	NST1	P53935	1240 aa		18.65	■□□□□ 0.58
DEP1	YAL013W	LEU2	P04173	364 aa	Predicted RBP	18.61	■□□□□ 0.57
DEP1	YAL013W	ENP1	P38333	483 aa	Known RBP	18.59	■□□□□ 0.57
DEP1	YAL013W	MTR4	P47047	1073 aa	Known RBP	18.59	■□□□□ 0.57
DEP1	YAL013W	PRP43	P53131	767 aa	Known RBP	18.59	■□□□□ 0.57
DEP1	YAL013W	PTP3	P40048	928 aa		18.54	■□□□□ 0.56
DEP1	YAL013W	YEF3	P16521	1044 aa	Known RBP	18.52	■□□□□ 0.56
DEP1	YAL013W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	18.52	■□□□□ 0.56	RIP-Chip
DEP1	YAL013W	LEU3	P08638	886 aa		18.5	■□□□□ 0.55
DEP1	YAL013W	RRP5	Q05022	1729 aa	Known RBP	18.49	■□□□□ 0.55
DEP1	YAL013W	TAP42	Q04372	366 aa		18.49	■□□□□ 0.55
DEP1	YAL013W	AUS1	Q08409	1394 aa		18.45	■□□□□ 0.54
DEP1	YAL013W	PDI1	P17967	522 aa	Known RBP	18.45	■□□□□ 0.54
DEP1	YAL013W	IOC4	Q04213	475 aa		18.45	■□□□□ 0.54
DEP1	YAL013W	YIL177C	P40434	1758 aa		18.45	■□□□□ 0.54
DEP1	YAL013W	YJL225C	P40889	1758 aa		18.45	■□□□□ 0.54
DEP1	YAL013W	RPS24A	P0CX31	135 aa	Known RBP	18.43	■□□□□ 0.54
DEP1	YAL013W	RPS24B	P0CX32	135 aa	Known RBP	18.43	■□□□□ 0.54
DEP1	YAL013W	TRK1	P12685	1235 aa		18.43	■□□□□ 0.54
DEP1	YAL013W	CSE4	P36012	229 aa		18.42	■□□□□ 0.54
DEP1	YAL013W	YRF1-2	P40105	1681 aa		18.41	■□□□□ 0.54
DEP1	YAL013W	GRX4	P32642	244 aa		18.38	■□□□□ 0.53
DEP1	YAL013W	RTF1	P53064	558 aa		18.38	■□□□□ 0.53
DEP1	YAL013W	HIM1	Q06674	414 aa		18.36	■□□□□ 0.53
DEP1	YAL013W	SNF2	P22082	1703 aa		18.33	■□□□□ 0.52
DEP1	YAL013W	PRP5	P21372	849 aa	Predicted RBP	18.32	■□□□□ 0.52
DEP1	YAL013W	KAR2	P16474	682 aa	Known RBP	18.3	■□□□□ 0.52
DEP1	YAL013W	PRP45	P28004	379 aa	Predicted RBP	18.3	■□□□□ 0.52
DEP1	YAL013W	URB1	P34241	1764 aa	Known RBP	18.3	■□□□□ 0.52
DEP1	YAL013W	FKS3	Q04952	1785 aa		18.27	■□□□□ 0.52
DEP1	YAL013W	APC1	P53886	1748 aa		18.27	■□□□□ 0.52
DEP1	YAL013W	RRP46	P53256	223 aa	Predicted RBP	18.27	■□□□□ 0.52
DEP1	YAL013W	GAS4	Q08271	471 aa		18.27	■□□□□ 0.52
DEP1	YAL013W	DPS1	P04802	557 aa	Known RBP	18.26	■□□□□ 0.51
DEP1	YAL013W	PRS1	P32895	427 aa	Known RBP	18.25	■□□□□ 0.51
DEP1	YAL013W	YAH1	Q12184	172 aa	Known RBP	18.25	■□□□□ 0.51
DEP1	YAL013W	MSB3	P48566	633 aa	Predicted RBP	18.24	■□□□□ 0.51
DEP1	YAL013W	RPO41	P13433	1351 aa	Known RBP	18.24	■□□□□ 0.51
DEP1	YAL013W	SLM3	Q12093	417 aa		18.23	■□□□□ 0.51
DEP1	YAL013W	REB1	P21538	810 aa		18.22	■□□□□ 0.51
DEP1	YAL013W	ENT1	Q12518	454 aa		18.18	■□□□□ 0.5
DEP1	YAL013W	RPP0	P05317	312 aa	Known RBP	18.17	■□□□□ 0.5
DEP1	YAL013W	YRF1-3	P0CX14	1859 aa		18.14	■□□□□ 0.49
DEP1	YAL013W	YRF1-7	P0CX15	1859 aa		18.14	■□□□□ 0.49
DEP1	YAL013W	YRF1-6	P53819	1859 aa		18.14	■□□□□ 0.49
DEP1	YAL013W	APP1	P53933	587 aa		18.14	■□□□□ 0.49
DEP1	YAL013W	PAP2	P53632	584 aa	Known RBP	18.13	■□□□□ 0.49
DEP1	YAL013W	YDL144C	Q07589	356 aa		18.12	■□□□□ 0.49
DEP1	YAL013W	TCB1	Q12466	1186 aa		18.12	■□□□□ 0.49
DEP1	YAL013W	ENV9	Q08651	330 aa		18.11	■□□□□ 0.49
DEP1	YAL013W	YRF1-4	O13559	1382 aa		18.11	■□□□□ 0.49
DEP1	YAL013W	RSF2	P46974	1380 aa		18.11	■□□□□ 0.49
DEP1	YAL013W	RTR1	P40084	226 aa	Predicted RBP	18.1	■□□□□ 0.49
DEP1	YAL013W	VPS27	P40343	622 aa	Known RBP	18.08	■□□□□ 0.48
DEP1	YAL013W	PRD1	P25375	712 aa		18.07	■□□□□ 0.48
DEP1	YAL013W	MPP10	P47083	593 aa	Known RBP	18.07	■□□□□ 0.48
DEP1	YAL013W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	18.06	■□□□□ 0.48	not detected
DEP1	YAL013W	AKL1	P38080	1108 aa	Known RBP	18.05	■□□□□ 0.48
DEP1	YAL013W	XKS1	P42826	600 aa		18.05	■□□□□ 0.48
DEP1	YAL013W	DSD1	P53095	428 aa		18.04	■□□□□ 0.48
DEP1	YAL013W	CDC45	Q08032	650 aa		18.04	■□□□□ 0.48
DEP1	YAL013W	SIR4	P11978	1358 aa		18.03	■□□□□ 0.48
DEP1	YAL013W	THI22	Q06490	572 aa		18.02	■□□□□ 0.48
DEP1	YAL013W	RCR1	P38212	213 aa		17.99	■□□□□ 0.47
DEP1	YAL013W	SUI2	P20459	304 aa	Known RBP	17.98	■□□□□ 0.47
DEP1	YAL013W	IES2	P40154	320 aa		17.98	■□□□□ 0.47
DEP1	YAL013W	IMH1	Q06704	911 aa	Known RBP	17.96	■□□□□ 0.47
DEP1	YAL013W	SAP155	P43612	1002 aa		17.95	■□□□□ 0.46
DEP1	YAL013W	HEF3	P53978	1044 aa	Known RBP	17.95	■□□□□ 0.46
DEP1	YAL013W	NTH2	P35172	780 aa		17.94	■□□□□ 0.46
DEP1	YAL013W	CTF4	Q01454	927 aa		17.94	■□□□□ 0.46
DEP1	YAL013W	RVB2	Q12464	471 aa	Known RBP	17.94	■□□□□ 0.46
DEP1	YAL013W	YNL050C	P53952	270 aa		17.91	■□□□□ 0.46
DEP1	YAL013W	HSP104	P31539	908 aa	Known RBP	17.9	■□□□□ 0.46
DEP1	YAL013W	YRB30	P53107	440 aa	Predicted RBP	17.9	■□□□□ 0.46
DEP1	YAL013W	RTT109	Q07794	436 aa		17.89	■□□□□ 0.45
DEP1	YAL013W	TPD3	P31383	635 aa		17.88	■□□□□ 0.45
DEP1	YAL013W	YIL055C	P40523	627 aa	Known RBP	17.87	■□□□□ 0.45
DEP1	YAL013W	ROM2	P51862	1356 aa	Known RBP	17.87	■□□□□ 0.45
DEP1	YAL013W	INP54	Q08227	384 aa	Known RBP	17.86	■□□□□ 0.45
DEP1	YAL013W	AOS1	Q06624	347 aa		17.85	■□□□□ 0.45
DEP1	YAL013W	YKL133C	P36066	463 aa		17.84	■□□□□ 0.45
DEP1	YAL013W	NUP145	P49687	1317 aa		17.83	■□□□□ 0.44
DEP1	YAL013W	ADE16	P54113	591 aa	Known RBP	17.82	■□□□□ 0.44
DEP1	YAL013W	MEC3	Q02574	474 aa		17.82	■□□□□ 0.44

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