RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 BBXQ8WY36 941 aaPredicted RBP5.35□□□□□ -1.55
SMG6-208ENST00000570874 CHMP4AQ9BY43 222 aa5.35□□□□□ -1.55
SMG6-208ENST00000570874 CTTNBP2Q8WZ74 1663 aa5.34□□□□□ -1.55
SMG6-208ENST00000570874 UBE2Q2Q8WVN8 375 aa5.34□□□□□ -1.55
SMG6-208ENST00000570874 CFAP44Q96MT7 982 aa5.34□□□□□ -1.55
SMG6-208ENST00000570874 THOC2Q8NI27 1593 aaKnown RBP5.33□□□□□ -1.56
SMG6-208ENST00000570874 POLA1P09884 1462 aaPredicted RBP5.33□□□□□ -1.56
SMG6-208ENST00000570874 RAPGEF2Q9Y4G8 1499 aa5.33□□□□□ -1.56
SMG6-208ENST00000570874 EEA1Q15075 1411 aa5.33□□□□□ -1.56
SMG6-208ENST00000570874 ZBTB7CA1YPR0 619 aa5.33□□□□□ -1.56
SMG6-208ENST00000570874 ASTLQ6HA08 431 aaPredicted RBP5.33□□□□□ -1.56
SMG6-208ENST00000570874 PHF12Q96QT6 1004 aa5.33□□□□□ -1.56
SMG6-208ENST00000570874 TARBP1Q13395 1621 aaKnown RBP5.33□□□□□ -1.56
SMG6-208ENST00000570874 ABCA5Q8WWZ7 1642 aa5.33□□□□□ -1.56
SMG6-208ENST00000570874 CUX2O14529 1486 aa5.32□□□□□ -1.56
SMG6-208ENST00000570874 GOLGA3Q08378 1498 aa5.32□□□□□ -1.56
SMG6-208ENST00000570874 BCL11AQ9H165 835 aa5.32□□□□□ -1.56
SMG6-208ENST00000570874 BRD2P25440 801 aaKnown RBP5.31□□□□□ -1.56
SMG6-208ENST00000570874 CEP162Q5TB80 1403 aa5.31□□□□□ -1.56
SMG6-208ENST00000570874 ERICH3Q5RHP9 1530 aa5.3□□□□□ -1.56
SMG6-208ENST00000570874 ATMINO43313 823 aaPredicted RBP5.3□□□□□ -1.56
SMG6-208ENST00000570874 CUL7Q14999 1698 aa5.3□□□□□ -1.56
SMG6-208ENST00000570874 PDS5BQ9NTI5 1447 aa5.3□□□□□ -1.56
SMG6-208ENST00000570874 WDR62O43379 1518 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 ABCA10Q8WWZ4 1543 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 PRXQ9BXM0 1461 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 MRC2Q9UBG0 1479 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 PUS7Q96PZ0 661 aaKnown RBP5.29□□□□□ -1.56
SMG6-208ENST00000570874 KIF27Q86VH2 1401 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 TNIKQ9UKE5 1360 aa5.29□□□□□ -1.56
SMG6-208ENST00000570874 ST18O60284 1047 aa5.28□□□□□ -1.56
SMG6-208ENST00000570874 LRRIQ1Q96JM4 1722 aa5.28□□□□□ -1.56
SMG6-208ENST00000570874 EIF4G3O43432 1585 aaKnown RBP5.27□□□□□ -1.57
SMG6-208ENST00000570874 IGSF3O75054 1194 aa5.27□□□□□ -1.57
SMG6-208ENST00000570874 PPARGC1BQ86YN6 1023 aaKnown RBP5.27□□□□□ -1.57
SMG6-208ENST00000570874 TSHZ2Q9NRE2 1034 aa5.27□□□□□ -1.57
SMG6-208ENST00000570874 TAF7LQ5H9L4 462 aa5.26□□□□□ -1.57
SMG6-208ENST00000570874 ERCC6Q03468 1493 aa5.26□□□□□ -1.57
SMG6-208ENST00000570874 ADAMTS12P58397 1594 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 ZNF608Q9ULD9 1512 aaPredicted RBP5.25□□□□□ -1.57
SMG6-208ENST00000570874 NEFLP07196 543 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 PDE4CQ08493 712 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 MKRN4PQ13434 485 aaPredicted RBP5.25□□□□□ -1.57
SMG6-208ENST00000570874 DNAJC5Q9H3Z4 198 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 IGF1RP08069 1367 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 ARAP1Q96P48 1450 aa5.25□□□□□ -1.57
SMG6-208ENST00000570874 CHD1O14646 1710 aa5.24□□□□□ -1.57
SMG6-208ENST00000570874 PAK3O75914 559 aaPredicted RBP5.24□□□□□ -1.57
SMG6-208ENST00000570874 SPRYD3Q8NCJ5 442 aa5.24□□□□□ -1.57
SMG6-208ENST00000570874 MS4A3Q96HJ5 214 aa5.24□□□□□ -1.57
SMG6-208ENST00000570874 TDRD9Q8NDG6 1382 aaKnown RBP5.24□□□□□ -1.57
SMG6-208ENST00000570874 GAPVD1Q14C86 1478 aa5.24□□□□□ -1.57
SMG6-208ENST00000570874 CLIP1P30622 1438 aa5.23□□□□□ -1.57
SMG6-208ENST00000570874 POTEFA5A3E0 1075 aa5.23□□□□□ -1.57
SMG6-208ENST00000570874 PCGF6Q9BYE7 350 aa5.23□□□□□ -1.57
SMG6-208ENST00000570874 CARMIL1Q5VZK9 1371 aa5.23□□□□□ -1.57
SMG6-208ENST00000570874 AQRO60306 1485 aaKnown RBP eCLIP5.23□□□□□ -1.57
SMG6-208ENST00000570874 RSPH6AQ9H0K4 717 aa5.22□□□□□ -1.57
SMG6-208ENST00000570874 CFAP43Q8NDM7 1665 aa5.21□□□□□ -1.57
SMG6-208ENST00000570874 ARHGAP35Q9NRY4 1499 aa5.21□□□□□ -1.58
SMG6-208ENST00000570874 PKD2Q13563 968 aa5.21□□□□□ -1.58
SMG6-208ENST00000570874 PCF11O94913 1555 aaKnown RBP5.21□□□□□ -1.58
SMG6-208ENST00000570874 IFT140Q96RY7 1462 aa5.2□□□□□ -1.58
SMG6-208ENST00000570874 ATN1P54259 1190 aaPredicted RBP5.2□□□□□ -1.58
SMG6-208ENST00000570874 DHX37Q8IY37 1157 aaKnown RBP5.2□□□□□ -1.58
SMG6-208ENST00000570874 ARID3AQ99856 593 aa5.2□□□□□ -1.58
SMG6-208ENST00000570874 ZMYND15Q9H091 742 aa5.2□□□□□ -1.58
SMG6-208ENST00000570874 SAMD9Q5K651 1589 aa5.2□□□□□ -1.58
SMG6-208ENST00000570874 ATXN8OSP0DMR3 200 aa5.19□□□□□ -1.58
SMG6-208ENST00000570874 VPS8Q8N3P4 1428 aa5.19□□□□□ -1.58
SMG6-208ENST00000570874 SNAPC4Q5SXM2 1469 aa5.19□□□□□ -1.58
SMG6-208ENST00000570874 NPM1P06748 294 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMG6-208ENST00000570874 BRPF1P55201 1214 aaPredicted RBP5.18□□□□□ -1.58
SMG6-208ENST00000570874 POLR3GLQ9BT43 218 aa5.18□□□□□ -1.58
SMG6-208ENST00000570874 CREBZFQ9NS37 354 aa5.18□□□□□ -1.58
SMG6-208ENST00000570874 BCCIPQ9P287 314 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMG6-208ENST00000570874 IQGAP2Q13576 1575 aa5.17□□□□□ -1.58
SMG6-208ENST00000570874 CEP170Q5SW79 1584 aa5.17□□□□□ -1.58
SMG6-208ENST00000570874 TMEM121BQ9BXQ6 578 aaPredicted RBP5.17□□□□□ -1.58
SMG6-208ENST00000570874 GRIN2BQ13224 1484 aa5.17□□□□□ -1.58
SMG6-208ENST00000570874 FHOD3Q2V2M9 1422 aa5.16□□□□□ -1.58
SMG6-208ENST00000570874 NECTIN2Q92692 538 aa5.16□□□□□ -1.58
SMG6-208ENST00000570874 TIAM1Q13009 1591 aa5.16□□□□□ -1.58
SMG6-208ENST00000570874 FHAD1B1AJZ9 1412 aa5.15□□□□□ -1.58
SMG6-208ENST00000570874 EFCAB5A4FU69 1503 aa5.15□□□□□ -1.58
SMG6-208ENST00000570874 P3H3Q8IVL6 736 aa5.15□□□□□ -1.59
SMG6-208ENST00000570874 SLAIN1Q8ND83 568 aa5.15□□□□□ -1.59
SMG6-208ENST00000570874 GRIN2AQ12879 1464 aa5.14□□□□□ -1.59
SMG6-208ENST00000570874 KCTD17Q8N5Z5 321 aa5.14□□□□□ -1.59
SMG6-208ENST00000570874 KIAA0556O60303 1618 aa5.14□□□□□ -1.59
SMG6-208ENST00000570874 MARVELD3Q96A59 401 aa5.13□□□□□ -1.59
SMG6-208ENST00000570874 MAGI1Q96QZ7 1491 aaPredicted RBP5.13□□□□□ -1.59
SMG6-208ENST00000570874 RAD21O60216 631 aa5.12□□□□□ -1.59
SMG6-208ENST00000570874 ZNF326Q5BKZ1 582 aaKnown RBP5.12□□□□□ -1.59
SMG6-208ENST00000570874 KANK4Q5T7N3 995 aaPredicted RBP5.12□□□□□ -1.59
SMG6-208ENST00000570874 KRTAP3-3Q9BYR6 98 aa5.12□□□□□ -1.59
SMG6-208ENST00000570874 KRTAP3-2Q9BYR7 98 aa5.12□□□□□ -1.59
SMG6-208ENST00000570874 COLQQ9Y215 455 aaPredicted RBP5.12□□□□□ -1.59
SMG6-208ENST00000570874 SYNJ2O15056 1496 aa5.12□□□□□ -1.59
SMG6-208ENST00000570874 UGGT2Q9NYU1 1516 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms