RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 AEBP2Q6ZN18 517 aaPredicted RBP11.21□□□□□ -0.61
SMG6-208ENST00000570874 CHIC1Q5VXU3 224 aa10.45□□□□□ -0.74
SMG6-208ENST00000570874 POTEDQ86YR6 584 aa9.77□□□□□ -0.85
SMG6-208ENST00000570874 SENP3Q9H4L4 574 aaPredicted RBP9.66□□□□□ -0.86
SMG6-208ENST00000570874 PHF23Q9BUL5 403 aaPredicted RBP9.42□□□□□ -0.9
SMG6-208ENST00000570874 FOXD1Q16676 465 aa9.09□□□□□ -0.95
SMG6-208ENST00000570874 MSH5O43196 834 aa8.77□□□□□ -1.01
SMG6-208ENST00000570874 PIAS4Q8N2W9 510 aaPredicted RBP8.34□□□□□ -1.07
SMG6-208ENST00000570874 CACNB1Q02641 598 aaPredicted RBP7.96□□□□□ -1.14
SMG6-208ENST00000570874 PPP6R1Q9UPN7 881 aa7.96□□□□□ -1.14
SMG6-208ENST00000570874 ADRA2BP18089 450 aa7.89□□□□□ -1.15
SMG6-208ENST00000570874 PLPPR3Q6T4P5 718 aa7.63□□□□□ -1.19
SMG6-208ENST00000570874 DMRT2Q9Y5R5 561 aa7.56□□□□□ -1.2
SMG6-208ENST00000570874 POTEHQ6S545 545 aa7.52□□□□□ -1.21
SMG6-208ENST00000570874 NISCHQ9Y2I1 1504 aa7.51□□□□□ -1.21
SMG6-208ENST00000570874 MAPK8IP2Q13387 824 aaPredicted RBP7.45□□□□□ -1.22
SMG6-208ENST00000570874 RNF39Q9H2S5 420 aa7.43□□□□□ -1.22
SMG6-208ENST00000570874 DCAF8L1A6NGE4 600 aa7.29□□□□□ -1.24
SMG6-208ENST00000570874 C1QBPQ07021 282 aaKnown RBP7.26□□□□□ -1.25
SMG6-208ENST00000570874 SLC24A1O60721 1099 aa7.25□□□□□ -1.25
SMG6-208ENST00000570874 SCAF1Q9H7N4 1312 aaKnown RBP7.2□□□□□ -1.26
SMG6-208ENST00000570874 HOXD11P31277 338 aaPredicted RBP6.99□□□□□ -1.29
SMG6-208ENST00000570874 DNAJC5BQ9UF47 199 aa6.87□□□□□ -1.31
SMG6-208ENST00000570874 RNF216Q9NWF9 866 aaPredicted RBP6.74□□□□□ -1.33
SMG6-208ENST00000570874 DSG3P32926 999 aa6.72□□□□□ -1.33
SMG6-208ENST00000570874 SP7Q8TDD2 431 aaPredicted RBP6.72□□□□□ -1.33
SMG6-208ENST00000570874 EHMT2Q96KQ7 1210 aa6.69□□□□□ -1.34
SMG6-208ENST00000570874 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.66□□□□□ -1.346e-8■■■■□ 25.6
SMG6-208ENST00000570874 CNKSR2Q8WXI2 1034 aa6.63□□□□□ -1.35
SMG6-208ENST00000570874 DAXXQ9UER7 740 aaPredicted RBP6.61□□□□□ -1.35
SMG6-208ENST00000570874 CCDC180Q9P1Z9 1646 aa6.61□□□□□ -1.35
SMG6-208ENST00000570874 CAPN15O75808 1086 aa6.59□□□□□ -1.35
SMG6-208ENST00000570874 PPP4R3CPQ6ZMV5 832 aa6.59□□□□□ -1.35
SMG6-208ENST00000570874 CHRDL2Q6WN34 429 aa6.57□□□□□ -1.36
SMG6-208ENST00000570874 SPINK5Q9NQ38 1064 aaPredicted RBP6.57□□□□□ -1.36
SMG6-208ENST00000570874 PLSCR2Q9NRY7 297 aa6.5□□□□□ -1.37
SMG6-208ENST00000570874 NCBP3Q53F19 620 aaKnown RBP6.49□□□□□ -1.37
SMG6-208ENST00000570874 AMER1Q5JTC6 1135 aaPredicted RBP6.49□□□□□ -1.37
SMG6-208ENST00000570874 RTN4Q9NQC3 1192 aaKnown RBP6.46□□□□□ -1.38
SMG6-208ENST00000570874 U3KPZ7 1027 aaPredicted RBP6.46□□□□□ -1.38
SMG6-208ENST00000570874 TTBK1Q5TCY1 1321 aaPredicted RBP6.45□□□□□ -1.38
SMG6-208ENST00000570874 RBM42Q9BTD8 480 aaKnown RBP6.43□□□□□ -1.38
SMG6-208ENST00000570874 ABCB7O75027 752 aa6.4□□□□□ -1.38
SMG6-208ENST00000570874 MYT1Q01538 1121 aa6.4□□□□□ -1.38
SMG6-208ENST00000570874 HAX1O00165 279 aa6.33□□□□□ -1.4
SMG6-208ENST00000570874 PELP1Q8IZL8 1130 aaKnown RBP6.32□□□□□ -1.4
SMG6-208ENST00000570874 ZCCHC6Q5VYS8 1495 aaKnown RBP6.32□□□□□ -1.4
SMG6-208ENST00000570874 TRHP20396 242 aaPredicted RBP6.31□□□□□ -1.4
SMG6-208ENST00000570874 ARXQ96QS3 562 aa6.28□□□□□ -1.4
SMG6-208ENST00000570874 ZNF219Q9P2Y4 722 aaPredicted RBP6.28□□□□□ -1.4
SMG6-208ENST00000570874 LHX8Q68G74 356 aa6.27□□□□□ -1.41
SMG6-208ENST00000570874 PIP4P2Q8N4L2 257 aa6.27□□□□□ -1.41
SMG6-208ENST00000570874 KCNA4P22459 653 aa6.24□□□□□ -1.41
SMG6-208ENST00000570874 ERICH6Q7L0X2 663 aa6.24□□□□□ -1.41
SMG6-208ENST00000570874 CSRNP3Q8WYN3 585 aa6.24□□□□□ -1.41
SMG6-208ENST00000570874 APLP2Q06481 763 aa6.21□□□□□ -1.42
SMG6-208ENST00000570874 EVX2Q03828 476 aa6.2□□□□□ -1.42
SMG6-208ENST00000570874 SHROOM4Q9ULL8 1493 aa6.2□□□□□ -1.42
SMG6-208ENST00000570874 ABCC9O60706 1549 aa6.2□□□□□ -1.42
SMG6-208ENST00000570874 DCAF8L2P0C7V8 631 aa6.16□□□□□ -1.42
SMG6-208ENST00000570874 DCAF1Q9Y4B6 1507 aa6.15□□□□□ -1.42
SMG6-208ENST00000570874 UNC13AQ9UPW8 1703 aa6.15□□□□□ -1.42
SMG6-208ENST00000570874 RANGAP1P46060 587 aaPredicted RBP6.14□□□□□ -1.43
SMG6-208ENST00000570874 PRKCSHP14314 528 aaPredicted RBP6.12□□□□□ -1.43
SMG6-208ENST00000570874 AKT1S1Q96B36 256 aa6.12□□□□□ -1.43
SMG6-208ENST00000570874 SCRIBQ14160 1630 aa6.1□□□□□ -1.43
SMG6-208ENST00000570874 FXR2P51116 673 aaKnown RBP eCLIP6.1□□□□□ -1.43
SMG6-208ENST00000570874 HOMEZQ8IX15 550 aa6.08□□□□□ -1.44
SMG6-208ENST00000570874 REM2Q8IYK8 340 aaPredicted RBP6.07□□□□□ -1.44
SMG6-208ENST00000570874 TIMELESSQ9UNS1 1208 aa6.07□□□□□ -1.44
SMG6-208ENST00000570874 NACADO15069 1562 aa6.06□□□□□ -1.44
SMG6-208ENST00000570874 BCANQ96GW7 911 aa6.06□□□□□ -1.44
SMG6-208ENST00000570874 NPM3O75607 178 aaKnown RBP6.05□□□□□ -1.44
SMG6-208ENST00000570874 TAOK2Q9UL54 1235 aa6.05□□□□□ -1.44
SMG6-208ENST00000570874 MYO15BQ96JP2 1530 aa6.04□□□□□ -1.44
SMG6-208ENST00000570874 PITPNM1O00562 1244 aa6.04□□□□□ -1.44
SMG6-208ENST00000570874 RB1CC1Q8TDY2 1594 aa6.02□□□□□ -1.45
SMG6-208ENST00000570874 GABBR2O75899 941 aa6.02□□□□□ -1.45
SMG6-208ENST00000570874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.01□□□□□ -1.45
SMG6-208ENST00000570874 HNRNPUL2Q1KMD3 747 aaKnown RBP6.01□□□□□ -1.45
SMG6-208ENST00000570874 TULP1O00294 542 aaPredicted RBP6□□□□□ -1.45
SMG6-208ENST00000570874 SLC4A1APQ9BWU0 796 aaKnown RBP5.99□□□□□ -1.45
SMG6-208ENST00000570874 POLA2Q14181 598 aa5.97□□□□□ -1.45
SMG6-208ENST00000570874 POTEMA6NI47 508 aa5.96□□□□□ -1.46
SMG6-208ENST00000570874 SLC4A2P04920 1241 aa5.96□□□□□ -1.46
SMG6-208ENST00000570874 SAMD1Q6SPF0 538 aaPredicted RBP5.95□□□□□ -1.46
SMG6-208ENST00000570874 C19orf67A6NJJ6 358 aa5.93□□□□□ -1.46
SMG6-208ENST00000570874 TPRNQ4KMQ1 711 aa5.93□□□□□ -1.46
SMG6-208ENST00000570874 POTEGQ6S5H5 508 aa5.93□□□□□ -1.46
SMG6-208ENST00000570874 SUPT5HO00267 1087 aaKnown RBP5.92□□□□□ -1.46
SMG6-208ENST00000570874 BICRAQ9NZM4 1560 aa5.92□□□□□ -1.46
SMG6-208ENST00000570874 PLCB2Q00722 1185 aa5.9□□□□□ -1.46
SMG6-208ENST00000570874 POTEIP0CG38 1075 aa5.89□□□□□ -1.47
SMG6-208ENST00000570874 WIZO95785 1651 aa5.88□□□□□ -1.47
SMG6-208ENST00000570874 GTF3C3Q9Y5Q9 886 aa5.87□□□□□ -1.47
SMG6-208ENST00000570874 CECR2Q9BXF3 1484 aa5.87□□□□□ -1.47
SMG6-208ENST00000570874 PRKAR2AP13861 404 aaKnown RBP5.86□□□□□ -1.47
SMG6-208ENST00000570874 PODXL2Q9NZ53 605 aa5.86□□□□□ -1.47
SMG6-208ENST00000570874 PCDH10Q9P2E7 1040 aa5.86□□□□□ -1.47
SMG6-208ENST00000570874 OSCARQ8IYS5 282 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms