RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 IER5LQ5T953 404 aa8.72□□□□□ -1.01
SPG11-220ENST00000559933 TDRD9Q8NDG6 1382 aaKnown RBP8.71□□□□□ -1.02
SPG11-220ENST00000559933 IFT140Q96RY7 1462 aa8.7□□□□□ -1.02
SPG11-220ENST00000559933 ABCA10Q8WWZ4 1543 aa8.7□□□□□ -1.02
SPG11-220ENST00000559933 EIF4G3O43432 1585 aaKnown RBP8.7□□□□□ -1.02
SPG11-220ENST00000559933 PDAP1Q13442 181 aaKnown RBP8.7□□□□□ -1.02
SPG11-220ENST00000559933 ABCA5Q8WWZ7 1642 aa8.69□□□□□ -1.02
SPG11-220ENST00000559933 PSEN1P49768 467 aa8.69□□□□□ -1.02
SPG11-220ENST00000559933 MAMSTRQ6ZN01 415 aa8.68□□□□□ -1.02
SPG11-220ENST00000559933 AQRO60306 1485 aaKnown RBP eCLIP8.68□□□□□ -1.023e-7■■■■□ 22.8
SPG11-220ENST00000559933 PLCG2P16885 1265 aa8.67□□□□□ -1.02
SPG11-220ENST00000559933 PBRM1Q86U86 1689 aa8.67□□□□□ -1.02
SPG11-220ENST00000559933 MKRN3Q13064 507 aaKnown RBP8.66□□□□□ -1.02
SPG11-220ENST00000559933 KIF27Q86VH2 1401 aa8.65□□□□□ -1.02
SPG11-220ENST00000559933 GAPVD1Q14C86 1478 aa8.64□□□□□ -1.03
SPG11-220ENST00000559933 POTEB2H3BUK9 544 aa8.64□□□□□ -1.03
SPG11-220ENST00000559933 SCUBE2Q9NQ36 999 aa8.64□□□□□ -1.03
SPG11-220ENST00000559933 TAOK2Q9UL54 1235 aa8.63□□□□□ -1.03
SPG11-220ENST00000559933 COLQQ9Y215 455 aaPredicted RBP8.63□□□□□ -1.03
SPG11-220ENST00000559933 RIOK3O14730 519 aaKnown RBP8.62□□□□□ -1.03
SPG11-220ENST00000559933 SNAPC4Q5SXM2 1469 aa8.62□□□□□ -1.03
SPG11-220ENST00000559933 ECM2O94769 699 aaPredicted RBP8.61□□□□□ -1.03
SPG11-220ENST00000559933 OCEL1Q9H607 264 aa8.61□□□□□ -1.03
SPG11-220ENST00000559933 ADAMTS12P58397 1594 aa8.61□□□□□ -1.03
SPG11-220ENST00000559933 IGF1RP08069 1367 aa8.61□□□□□ -1.03
SPG11-220ENST00000559933 GRIN2BQ13224 1484 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 RAPGEF2Q9Y4G8 1499 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 LOC105371045A0A1W2PR82 267 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 POTEFA5A3E0 1075 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 OTUD5Q96G74 571 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 EEA1Q15075 1411 aa8.6□□□□□ -1.03
SPG11-220ENST00000559933 ERICH3Q5RHP9 1530 aa8.59□□□□□ -1.03
SPG11-220ENST00000559933 CABP2Q9NPB3 220 aa8.59□□□□□ -1.03
SPG11-220ENST00000559933 VGFO15240 615 aaPredicted RBP8.58□□□□□ -1.04
SPG11-220ENST00000559933 IRX5P78411 483 aaPredicted RBP8.58□□□□□ -1.04
SPG11-220ENST00000559933 CUL7Q14999 1698 aa8.58□□□□□ -1.04
SPG11-220ENST00000559933 KIF21BO75037 1637 aa8.58□□□□□ -1.04
SPG11-220ENST00000559933 PRXQ9BXM0 1461 aa8.57□□□□□ -1.04
SPG11-220ENST00000559933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.57□□□□□ -1.04
SPG11-220ENST00000559933 CARMIL1Q5VZK9 1371 aa8.56□□□□□ -1.04
SPG11-220ENST00000559933 CHD1O14646 1710 aa8.55□□□□□ -1.04
SPG11-220ENST00000559933 GOLGA3Q08378 1498 aa8.54□□□□□ -1.04
SPG11-220ENST00000559933 MAGI1Q96QZ7 1491 aaPredicted RBP8.54□□□□□ -1.04
SPG11-220ENST00000559933 POTEJP0CG39 1038 aa8.54□□□□□ -1.04
SPG11-220ENST00000559933 FHAD1B1AJZ9 1412 aa8.54□□□□□ -1.04
SPG11-220ENST00000559933 G3V3G9 751 aa8.53□□□□□ -1.04
SPG11-220ENST00000559933 RNF25Q96BH1 459 aaPredicted RBP8.53□□□□□ -1.04
SPG11-220ENST00000559933 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.52□□□□□ -1.05
SPG11-220ENST00000559933 L3MBTL3Q96JM7 780 aaPredicted RBP8.52□□□□□ -1.05
SPG11-220ENST00000559933 ZFP91Q96JP5 570 aaPredicted RBP8.52□□□□□ -1.05
SPG11-220ENST00000559933 SYNJ2O15056 1496 aa8.51□□□□□ -1.05
SPG11-220ENST00000559933 GRIN2AQ12879 1464 aa8.51□□□□□ -1.05
SPG11-220ENST00000559933 PKD2Q13563 968 aa8.51□□□□□ -1.05
SPG11-220ENST00000559933 CEP170Q5SW79 1584 aa8.51□□□□□ -1.05
SPG11-220ENST00000559933 RANGAP1P46060 587 aaPredicted RBP8.5□□□□□ -1.05
SPG11-220ENST00000559933 CTTNBP2Q8WZ74 1663 aa8.49□□□□□ -1.05
SPG11-220ENST00000559933 C3orf67Q6ZVT6 689 aa8.49□□□□□ -1.05
SPG11-220ENST00000559933 EFCAB3Q8N7B9 438 aa8.49□□□□□ -1.05
SPG11-220ENST00000559933 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.49□□□□□ -1.05
SPG11-220ENST00000559933 UBTFP17480 764 aaKnown RBP8.48□□□□□ -1.05
SPG11-220ENST00000559933 PDCD7Q8N8D1 485 aaKnown RBP8.48□□□□□ -1.05
SPG11-220ENST00000559933 CHMP7Q8WUX9 453 aaPredicted RBP8.48□□□□□ -1.05
SPG11-220ENST00000559933 STK25O00506 426 aa8.47□□□□□ -1.05
SPG11-220ENST00000559933 SLAIN1Q8ND83 568 aa8.47□□□□□ -1.05
SPG11-220ENST00000559933 BCL11BQ9C0K0 894 aaPredicted RBP8.47□□□□□ -1.05
SPG11-220ENST00000559933 STK24Q9Y6E0 443 aa8.47□□□□□ -1.05
SPG11-220ENST00000559933 RGL2O15211 777 aa8.46□□□□□ -1.06
SPG11-220ENST00000559933 SOX12O15370 315 aa8.46□□□□□ -1.06
SPG11-220ENST00000559933 NUP160Q12769 1436 aa8.45□□□□□ -1.06
SPG11-220ENST00000559933 CEP162Q5TB80 1403 aa8.45□□□□□ -1.06
SPG11-220ENST00000559933 TNIKQ9UKE5 1360 aa8.44□□□□□ -1.06
SPG11-220ENST00000559933 IQGAP2Q13576 1575 aa8.44□□□□□ -1.06
SPG11-220ENST00000559933 ILDR1Q86SU0 546 aaPredicted RBP8.43□□□□□ -1.06
SPG11-220ENST00000559933 CLASP1Q7Z460 1538 aa8.43□□□□□ -1.06
SPG11-220ENST00000559933 BOLA1Q9Y3E2 137 aa8.42□□□□□ -1.06
SPG11-220ENST00000559933 DPY19L2Q6NUT2 758 aa8.41□□□□□ -1.06
SPG11-220ENST00000559933 FAM163AQ96GL9 167 aaPredicted RBP8.41□□□□□ -1.06
SPG11-220ENST00000559933 ERCC6L2Q5T890 1561 aa8.4□□□□□ -1.06
SPG11-220ENST00000559933 KIAA0586Q9BVV6 1533 aa8.4□□□□□ -1.06
SPG11-220ENST00000559933 CLIP1P30622 1438 aa8.4□□□□□ -1.06
SPG11-220ENST00000559933 NLRP6P59044 892 aa8.4□□□□□ -1.06
SPG11-220ENST00000559933 ARAP1Q96P48 1450 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 ARHGAP35Q9NRY4 1499 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 SNPHO15079 494 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 P3H3Q8IVL6 736 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 PHF8Q9UPP1 1060 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 SAMD9Q5K651 1589 aa8.39□□□□□ -1.07
SPG11-220ENST00000559933 FHOD3Q2V2M9 1422 aa8.38□□□□□ -1.07
SPG11-220ENST00000559933 DISP1Q96F81 1524 aa8.38□□□□□ -1.07
SPG11-220ENST00000559933 KIAA0556O60303 1618 aa8.37□□□□□ -1.07
SPG11-220ENST00000559933 SHROOM2Q13796 1616 aa8.37□□□□□ -1.07
SPG11-220ENST00000559933 UGGT2Q9NYU1 1516 aa8.37□□□□□ -1.07
SPG11-220ENST00000559933 TTBK1Q5TCY1 1321 aaPredicted RBP8.36□□□□□ -1.07
SPG11-220ENST00000559933 PRG4Q92954 1404 aaPredicted RBP8.35□□□□□ -1.07
SPG11-220ENST00000559933 EFCAB5A4FU69 1503 aa8.34□□□□□ -1.08
SPG11-220ENST00000559933 PCF11O94913 1555 aaKnown RBP8.33□□□□□ -1.08
SPG11-220ENST00000559933 CHGAP10645 457 aaKnown RBP8.33□□□□□ -1.08
SPG11-220ENST00000559933 JPH4Q96JJ6 628 aa8.33□□□□□ -1.08
SPG11-220ENST00000559933 POTEMA6NI47 508 aa8.32□□□□□ -1.08
SPG11-220ENST00000559933 MS4A4AQ96JQ5 239 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms