RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 AEBP2Q6ZN18 517 aaPredicted RBP17.97■□□□□ 0.47
SPG11-220ENST00000559933 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
SPG11-220ENST00000559933 SENP3Q9H4L4 574 aaPredicted RBP15.42■□□□□ 0.06
SPG11-220ENST00000559933 PHF23Q9BUL5 403 aaPredicted RBP15.21■□□□□ 0.03
SPG11-220ENST00000559933 FOXD1Q16676 465 aa14.27□□□□□ -0.13
SPG11-220ENST00000559933 PLPPR3Q6T4P5 718 aa14.03□□□□□ -0.16
SPG11-220ENST00000559933 ADRA2BP18089 450 aa13.49□□□□□ -0.25
SPG11-220ENST00000559933 PPP6R1Q9UPN7 881 aa13.47□□□□□ -0.25
SPG11-220ENST00000559933 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.25
SPG11-220ENST00000559933 MSH5O43196 834 aa13.36□□□□□ -0.27
SPG11-220ENST00000559933 POTEDQ86YR6 584 aa12.57□□□□□ -0.4
SPG11-220ENST00000559933 SCAF1Q9H7N4 1312 aaKnown RBP12.49□□□□□ -0.41
SPG11-220ENST00000559933 MAPK8IP2Q13387 824 aaPredicted RBP12.3□□□□□ -0.44
SPG11-220ENST00000559933 PPP4R3CPQ6ZMV5 832 aa12.3□□□□□ -0.44
SPG11-220ENST00000559933 NISCHQ9Y2I1 1504 aa12.27□□□□□ -0.45
SPG11-220ENST00000559933 DMRT2Q9Y5R5 561 aa12.22□□□□□ -0.45
SPG11-220ENST00000559933 CNKSR2Q8WXI2 1034 aa12.04□□□□□ -0.48
SPG11-220ENST00000559933 NCBP3Q53F19 620 aaKnown RBP11.99□□□□□ -0.49
SPG11-220ENST00000559933 RNF216Q9NWF9 866 aaPredicted RBP11.85□□□□□ -0.51
SPG11-220ENST00000559933 HOXD11P31277 338 aaPredicted RBP11.84□□□□□ -0.51
SPG11-220ENST00000559933 DCAF8L1A6NGE4 600 aa11.82□□□□□ -0.52
SPG11-220ENST00000559933 NPM3O75607 178 aaKnown RBP11.69□□□□□ -0.54
SPG11-220ENST00000559933 KCNA4P22459 653 aa11.66□□□□□ -0.54
SPG11-220ENST00000559933 DNAJC5BQ9UF47 199 aa11.41□□□□□ -0.58
SPG11-220ENST00000559933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.39□□□□□ -0.59
SPG11-220ENST00000559933 RNF39Q9H2S5 420 aa11.36□□□□□ -0.59
SPG11-220ENST00000559933 CACNB1Q02641 598 aaPredicted RBP11.35□□□□□ -0.59
SPG11-220ENST00000559933 C1QBPQ07021 282 aaKnown RBP11.25□□□□□ -0.61
SPG11-220ENST00000559933 SLC4A1APQ9BWU0 796 aaKnown RBP11.13□□□□□ -0.63
SPG11-220ENST00000559933 U3KPZ7 1027 aaPredicted RBP11.08□□□□□ -0.64
SPG11-220ENST00000559933 SLC4A2P04920 1241 aa11.06□□□□□ -0.64
SPG11-220ENST00000559933 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.97□□□□□ -0.65
SPG11-220ENST00000559933 HNRNPUL2Q1KMD3 747 aaKnown RBP10.97□□□□□ -0.65
SPG11-220ENST00000559933 APLP2Q06481 763 aa10.96□□□□□ -0.65
SPG11-220ENST00000559933 CAPN15O75808 1086 aa10.91□□□□□ -0.66
SPG11-220ENST00000559933 SAMD1Q6SPF0 538 aaPredicted RBP10.88□□□□□ -0.67
SPG11-220ENST00000559933 MYCNP04198 464 aaPredicted RBP10.87□□□□□ -0.67
SPG11-220ENST00000559933 FOXD4L1Q9NU39 408 aa10.86□□□□□ -0.67
SPG11-220ENST00000559933 SPINK5Q9NQ38 1064 aaPredicted RBP10.85□□□□□ -0.67
SPG11-220ENST00000559933 TRHP20396 242 aaPredicted RBP10.78□□□□□ -0.68
SPG11-220ENST00000559933 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
SPG11-220ENST00000559933 CCDC180Q9P1Z9 1646 aa10.77□□□□□ -0.68
SPG11-220ENST00000559933 DSG3P32926 999 aa10.71□□□□□ -0.69
SPG11-220ENST00000559933 ZBTB22O15209 634 aa10.67□□□□□ -0.7
SPG11-220ENST00000559933 ABCB7O75027 752 aa10.64□□□□□ -0.71
SPG11-220ENST00000559933 ATXN8OSP0DMR3 200 aa10.53□□□□□ -0.72
SPG11-220ENST00000559933 POLA2Q14181 598 aa10.52□□□□□ -0.73
SPG11-220ENST00000559933 EHMT2Q96KQ7 1210 aa10.49□□□□□ -0.73
SPG11-220ENST00000559933 ATF5Q9Y2D1 282 aaPredicted RBP10.49□□□□□ -0.73
SPG11-220ENST00000559933 CSRNP3Q8WYN3 585 aa10.41□□□□□ -0.74
SPG11-220ENST00000559933 ABCC9O60706 1549 aa10.41□□□□□ -0.74
SPG11-220ENST00000559933 ZBTB12Q9Y330 459 aaPredicted RBP10.4□□□□□ -0.74
SPG11-220ENST00000559933 RBM42Q9BTD8 480 aaKnown RBP10.32□□□□□ -0.76
SPG11-220ENST00000559933 ZCCHC6Q5VYS8 1495 aaKnown RBP10.29□□□□□ -0.76
SPG11-220ENST00000559933 FBLN2P98095 1184 aa10.24□□□□□ -0.77
SPG11-220ENST00000559933 DCAF8L2P0C7V8 631 aa10.19□□□□□ -0.78
SPG11-220ENST00000559933 OSCARQ8IYS5 282 aa10.15□□□□□ -0.78
SPG11-220ENST00000559933 DCAF1Q9Y4B6 1507 aa10.08□□□□□ -0.8
SPG11-220ENST00000559933 AKT1S1Q96B36 256 aa10.08□□□□□ -0.8
SPG11-220ENST00000559933 NACADO15069 1562 aa10.05□□□□□ -0.8
SPG11-220ENST00000559933 SPDYE2BA6NHP3 402 aa10.04□□□□□ -0.8
SPG11-220ENST00000559933 SPDYE6P0CI01 402 aa10.04□□□□□ -0.8
SPG11-220ENST00000559933 SPDYE2Q495Y8 402 aa10.04□□□□□ -0.8
SPG11-220ENST00000559933 MKRN4PQ13434 485 aaPredicted RBP10.03□□□□□ -0.8
SPG11-220ENST00000559933 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
SPG11-220ENST00000559933 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
SPG11-220ENST00000559933 SCRIBQ14160 1630 aa9.97□□□□□ -0.81
SPG11-220ENST00000559933 ZNF692Q9BU19 519 aaPredicted RBP9.97□□□□□ -0.81
SPG11-220ENST00000559933 SHROOM4Q9ULL8 1493 aa9.97□□□□□ -0.81
SPG11-220ENST00000559933 REM2Q8IYK8 340 aaPredicted RBP9.96□□□□□ -0.82
SPG11-220ENST00000559933 CHRDL2Q6WN34 429 aa9.94□□□□□ -0.82
SPG11-220ENST00000559933 POTEHQ6S545 545 aa9.93□□□□□ -0.82
SPG11-220ENST00000559933 UNC13AQ9UPW8 1703 aa9.9□□□□□ -0.83
SPG11-220ENST00000559933 SSUH2Q9Y2M2 353 aa9.87□□□□□ -0.83
SPG11-220ENST00000559933 PITPNM1O00562 1244 aa9.84□□□□□ -0.83
SPG11-220ENST00000559933 SPDYE1Q8NFV5 336 aaPredicted RBP9.83□□□□□ -0.84
SPG11-220ENST00000559933 PABPN1Q86U42 306 aaKnown RBP eCLIP9.81□□□□□ -0.84
SPG11-220ENST00000559933 CLEC11AQ9Y240 323 aa9.81□□□□□ -0.84
SPG11-220ENST00000559933 BICRAQ9NZM4 1560 aa9.79□□□□□ -0.84
SPG11-220ENST00000559933 SPDYE4A6NLX3 237 aa9.77□□□□□ -0.85
SPG11-220ENST00000559933 PIP4P2Q8N4L2 257 aa9.73□□□□□ -0.85
SPG11-220ENST00000559933 FXR2P51116 673 aaKnown RBP eCLIP9.69□□□□□ -0.86
SPG11-220ENST00000559933 PRR29P0C7W0 189 aa9.68□□□□□ -0.86
SPG11-220ENST00000559933 STAG3Q9UJ98 1225 aa9.65□□□□□ -0.86
SPG11-220ENST00000559933 PRKAR2AP13861 404 aaKnown RBP9.63□□□□□ -0.87
SPG11-220ENST00000559933 CECR2Q9BXF3 1484 aa9.59□□□□□ -0.87
SPG11-220ENST00000559933 HAX1O00165 279 aa9.56□□□□□ -0.88
SPG11-220ENST00000559933 CHADLQ6NUI6 762 aa9.54□□□□□ -0.88
SPG11-220ENST00000559933 MROH2BQ7Z745 1585 aa9.51□□□□□ -0.89
SPG11-220ENST00000559933 FKBP8Q14318 412 aa9.51□□□□□ -0.89
SPG11-220ENST00000559933 DNAJC5Q9H3Z4 198 aa9.5□□□□□ -0.89
SPG11-220ENST00000559933 SMARCA4P51532 1647 aa9.49□□□□□ -0.89
SPG11-220ENST00000559933 EIF4G1Q04637 1599 aaKnown RBP9.49□□□□□ -0.89
SPG11-220ENST00000559933 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
SPG11-220ENST00000559933 PROM2Q8N271 834 aa9.47□□□□□ -0.89
SPG11-220ENST00000559933 RSF1Q96T23 1441 aaPredicted RBP9.46□□□□□ -0.9
SPG11-220ENST00000559933 WIZO95785 1651 aa9.45□□□□□ -0.9
SPG11-220ENST00000559933 SUPT5HO00267 1087 aaKnown RBP9.43□□□□□ -0.9
SPG11-220ENST00000559933 FARP1Q9Y4F1 1045 aaPredicted RBP9.43□□□□□ -0.9
SPG11-220ENST00000559933 SP7Q8TDD2 431 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms