RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
SYNE2-207ENST00000458046 MAP3K1Q13233 1512 aa16.71■□□□□ 0.27
SYNE2-207ENST00000458046 TARBP1Q13395 1621 aaKnown RBP16.71■□□□□ 0.27
SYNE2-207ENST00000458046 MAGI1Q96QZ7 1491 aaPredicted RBP16.71■□□□□ 0.27
SYNE2-207ENST00000458046 CCDC9Q9Y3X0 531 aaKnown RBP16.71■□□□□ 0.26
SYNE2-207ENST00000458046 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
SYNE2-207ENST00000458046 FHOD3Q2V2M9 1422 aa16.7■□□□□ 0.26
SYNE2-207ENST00000458046 HSP90B1P14625 803 aaKnown RBP16.67■□□□□ 0.26
SYNE2-207ENST00000458046 KCNH8Q96L42 1107 aa16.67■□□□□ 0.26
SYNE2-207ENST00000458046 NECTIN2Q92692 538 aa16.66■□□□□ 0.26
SYNE2-207ENST00000458046 PCF11O94913 1555 aaKnown RBP16.65■□□□□ 0.26
SYNE2-207ENST00000458046 TAF7LQ5H9L4 462 aa16.63■□□□□ 0.25
SYNE2-207ENST00000458046 POLA1P09884 1462 aaPredicted RBP16.63■□□□□ 0.25
SYNE2-207ENST00000458046 CERKQ8TCT0 537 aa16.63■□□□□ 0.25
SYNE2-207ENST00000458046 DDX10Q13206 875 aaKnown RBP16.62■□□□□ 0.25
SYNE2-207ENST00000458046 ARID3AQ99856 593 aa16.62■□□□□ 0.25
SYNE2-207ENST00000458046 HIRIP3Q9BW71 556 aaPredicted RBP16.61■□□□□ 0.25
SYNE2-207ENST00000458046 FOXD4L1Q9NU39 408 aa16.61■□□□□ 0.25
SYNE2-207ENST00000458046 SUPT16HQ9Y5B9 1047 aaKnown RBP16.61■□□□□ 0.25
SYNE2-207ENST00000458046 TOPBP1Q92547 1522 aa16.61■□□□□ 0.25
SYNE2-207ENST00000458046 ABCA10Q8WWZ4 1543 aa16.6■□□□□ 0.25
SYNE2-207ENST00000458046 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
SYNE2-207ENST00000458046 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.24
SYNE2-207ENST00000458046 CASKIN1Q8WXD9 1431 aa16.57■□□□□ 0.24
SYNE2-207ENST00000458046 CFAP43Q8NDM7 1665 aa16.56■□□□□ 0.24
SYNE2-207ENST00000458046 FYCO1Q9BQS8 1478 aa16.56■□□□□ 0.24
SYNE2-207ENST00000458046 IQSEC2Q5JU85 1478 aa16.55■□□□□ 0.24
SYNE2-207ENST00000458046 TDRD9Q8NDG6 1382 aaKnown RBP16.55■□□□□ 0.24
SYNE2-207ENST00000458046 PPP4R3CPQ6ZMV5 832 aa16.54■□□□□ 0.24
SYNE2-207ENST00000458046 PPP1R15AO75807 674 aaPredicted RBP16.53■□□□□ 0.24
SYNE2-207ENST00000458046 SHROOM2Q13796 1616 aa16.53■□□□□ 0.24
SYNE2-207ENST00000458046 BCL11BQ9C0K0 894 aaPredicted RBP16.53■□□□□ 0.24
SYNE2-207ENST00000458046 EFCAB5A4FU69 1503 aa16.52■□□□□ 0.23
SYNE2-207ENST00000458046 MTUS2Q5JR59 1369 aa16.52■□□□□ 0.23
SYNE2-207ENST00000458046 FAM69CQ0P6D2 419 aa16.51■□□□□ 0.23
SYNE2-207ENST00000458046 FMN1Q68DA7 1419 aa16.5■□□□□ 0.23
SYNE2-207ENST00000458046 AQRO60306 1485 aaKnown RBP eCLIP16.5■□□□□ 0.23
SYNE2-207ENST00000458046 PUS7Q96PZ0 661 aaKnown RBP16.49■□□□□ 0.23
SYNE2-207ENST00000458046 FGD6Q6ZV73 1430 aa16.49■□□□□ 0.23
SYNE2-207ENST00000458046 SNAPC4Q5SXM2 1469 aa16.49■□□□□ 0.23
SYNE2-207ENST00000458046 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.48■□□□□ 0.23
SYNE2-207ENST00000458046 C1orf115Q9H7X2 142 aa16.47■□□□□ 0.23
SYNE2-207ENST00000458046 CUL7Q14999 1698 aa16.47■□□□□ 0.23
SYNE2-207ENST00000458046 GLI2P10070 1586 aa16.47■□□□□ 0.23
SYNE2-207ENST00000458046 NEFLP07196 543 aa16.46■□□□□ 0.23
SYNE2-207ENST00000458046 HMGB1P09429 215 aaKnown RBP16.46■□□□□ 0.23
SYNE2-207ENST00000458046 PTPRKQ15262 1439 aa16.46■□□□□ 0.23
SYNE2-207ENST00000458046 PKD2Q13563 968 aa16.45■□□□□ 0.22
SYNE2-207ENST00000458046 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.44■□□□□ 0.22
SYNE2-207ENST00000458046 CTTNBP2Q8WZ74 1663 aa16.44■□□□□ 0.22
SYNE2-207ENST00000458046 TONSLQ96HA7 1378 aa16.44■□□□□ 0.22
SYNE2-207ENST00000458046 CCDC18Q5T9S5 1454 aa16.42■□□□□ 0.22
SYNE2-207ENST00000458046 CEP170Q5SW79 1584 aa16.42■□□□□ 0.22
SYNE2-207ENST00000458046 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.42■□□□□ 0.22
SYNE2-207ENST00000458046 PKNOX2Q96KN3 472 aa16.41■□□□□ 0.22
SYNE2-207ENST00000458046 ANP32CO43423 234 aa16.4■□□□□ 0.22
SYNE2-207ENST00000458046 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
SYNE2-207ENST00000458046 CHIC2Q9UKJ5 165 aa16.4■□□□□ 0.22
SYNE2-207ENST00000458046 NCOA2Q15596 1464 aa16.39■□□□□ 0.21
SYNE2-207ENST00000458046 BRPF1P55201 1214 aaPredicted RBP16.39■□□□□ 0.21
SYNE2-207ENST00000458046 CHMP7Q8WUX9 453 aaPredicted RBP16.39■□□□□ 0.21
SYNE2-207ENST00000458046 ZNF428Q96B54 188 aa16.39■□□□□ 0.21
SYNE2-207ENST00000458046 PPRC1Q5VV67 1664 aaKnown RBP16.38■□□□□ 0.21
SYNE2-207ENST00000458046 TRIM52Q96A61 297 aa16.38■□□□□ 0.21
SYNE2-207ENST00000458046 RRP7BPQ9NSQ0 103 aa16.38■□□□□ 0.21
SYNE2-207ENST00000458046 HFM1A2PYH4 1435 aa16.38■□□□□ 0.21
SYNE2-207ENST00000458046 ZBTB7CA1YPR0 619 aa16.38■□□□□ 0.21
SYNE2-207ENST00000458046 GRIN2BQ13224 1484 aa16.37■□□□□ 0.21
SYNE2-207ENST00000458046 UACAQ9BZF9 1416 aa16.37■□□□□ 0.21
SYNE2-207ENST00000458046 ARID3CA6NKF2 412 aa16.37■□□□□ 0.21
SYNE2-207ENST00000458046 MYOM3Q5VTT5 1437 aa16.37■□□□□ 0.21
SYNE2-207ENST00000458046 TSPOAP1O95153 1857 aa16.36■□□□□ 0.21
SYNE2-207ENST00000458046 NAIPQ13075 1403 aa16.36■□□□□ 0.21
SYNE2-207ENST00000458046 POLR3GLQ9BT43 218 aa16.35■□□□□ 0.21
SYNE2-207ENST00000458046 SAMD9Q5K651 1589 aa16.34■□□□□ 0.21
SYNE2-207ENST00000458046 ABCA5Q8WWZ7 1642 aa16.34■□□□□ 0.21
SYNE2-207ENST00000458046 PTPN23Q9H3S7 1636 aa16.34■□□□□ 0.21
SYNE2-207ENST00000458046 CCER2I3L3R5 266 aa16.33■□□□□ 0.2
SYNE2-207ENST00000458046 LRRIQ1Q96JM4 1722 aa16.33■□□□□ 0.2
SYNE2-207ENST00000458046 KIAA0586Q9BVV6 1533 aa16.3■□□□□ 0.2
SYNE2-207ENST00000458046 ADAMTSL3P82987 1691 aa16.29■□□□□ 0.2
SYNE2-207ENST00000458046 MAGI3Q5TCQ9 1506 aa16.29■□□□□ 0.2
SYNE2-207ENST00000458046 TEX14Q8IWB6 1497 aa16.29■□□□□ 0.2
SYNE2-207ENST00000458046 SUPT6HQ7KZ85 1726 aaKnown RBP16.28■□□□□ 0.2
SYNE2-207ENST00000458046 EHBP1L1Q8N3D4 1523 aa16.27■□□□□ 0.2
SYNE2-207ENST00000458046 UGGT2Q9NYU1 1516 aa16.25■□□□□ 0.19
SYNE2-207ENST00000458046 IRX6P78412 446 aaPredicted RBP16.25■□□□□ 0.19
SYNE2-207ENST00000458046 FGD1P98174 961 aa16.25■□□□□ 0.19
SYNE2-207ENST00000458046 PTPRMP28827 1452 aa16.24■□□□□ 0.19
SYNE2-207ENST00000458046 FOXD1Q16676 465 aa16.24■□□□□ 0.19
SYNE2-207ENST00000458046 NUP160Q12769 1436 aa16.23■□□□□ 0.19
SYNE2-207ENST00000458046 HSPA5P11021 654 aaKnown RBP16.22■□□□□ 0.19
SYNE2-207ENST00000458046 MPHOSPH9Q99550 1183 aa16.22■□□□□ 0.19
SYNE2-207ENST00000458046 PBRM1Q86U86 1689 aa16.21■□□□□ 0.19
SYNE2-207ENST00000458046 CDK13Q14004 1512 aaKnown RBP16.2■□□□□ 0.18
SYNE2-207ENST00000458046 KDM5BQ9UGL1 1544 aa16.2■□□□□ 0.18
SYNE2-207ENST00000458046 EPRSP07814 1512 aaKnown RBP16.2■□□□□ 0.18
SYNE2-207ENST00000458046 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
SYNE2-207ENST00000458046 MED1Q15648 1581 aaPredicted RBP16.19■□□□□ 0.18
SYNE2-207ENST00000458046 DENND4BO75064 1496 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms