RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 NISCHQ9Y2I1 1504 aa23.67■■□□□ 1.38
SYNE2-207ENST00000458046 SLC24A1O60721 1099 aa22.93■■□□□ 1.26
SYNE2-207ENST00000458046 DNAJC5Q9H3Z4 198 aa21.94■■□□□ 1.1
SYNE2-207ENST00000458046 DNAJC5BQ9UF47 199 aa21.79■■□□□ 1.08
SYNE2-207ENST00000458046 ABCC9O60706 1549 aa21.61■■□□□ 1.05
SYNE2-207ENST00000458046 CHIC1Q5VXU3 224 aa21.29■■□□□ 1
SYNE2-207ENST00000458046 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
SYNE2-207ENST00000458046 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
SYNE2-207ENST00000458046 DAXXQ9UER7 740 aaPredicted RBP20.74■□□□□ 0.91
SYNE2-207ENST00000458046 CCDC180Q9P1Z9 1646 aa20.66■□□□□ 0.9
SYNE2-207ENST00000458046 RTN4Q9NQC3 1192 aaKnown RBP20.65■□□□□ 0.9
SYNE2-207ENST00000458046 SHROOM4Q9ULL8 1493 aa20.46■□□□□ 0.87
SYNE2-207ENST00000458046 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
SYNE2-207ENST00000458046 NCBP3Q53F19 620 aaKnown RBP20.36■□□□□ 0.85
SYNE2-207ENST00000458046 CUX2O14529 1486 aa20.16■□□□□ 0.82
SYNE2-207ENST00000458046 SUPT5HO00267 1087 aaKnown RBP20.14■□□□□ 0.81
SYNE2-207ENST00000458046 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
SYNE2-207ENST00000458046 CECR2Q9BXF3 1484 aa19.95■□□□□ 0.78
SYNE2-207ENST00000458046 PRKCSHP14314 528 aaPredicted RBP19.94■□□□□ 0.78
SYNE2-207ENST00000458046 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
SYNE2-207ENST00000458046 AMER1Q5JTC6 1135 aaPredicted RBP19.89■□□□□ 0.78
SYNE2-207ENST00000458046 AEBP2Q6ZN18 517 aaPredicted RBP19.89■□□□□ 0.78
SYNE2-207ENST00000458046 KCNA4P22459 653 aa19.89■□□□□ 0.77
SYNE2-207ENST00000458046 APLP2Q06481 763 aa19.89■□□□□ 0.77
SYNE2-207ENST00000458046 NACADO15069 1562 aa19.86■□□□□ 0.77
SYNE2-207ENST00000458046 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
SYNE2-207ENST00000458046 TTBK1Q5TCY1 1321 aaPredicted RBP19.72■□□□□ 0.75
SYNE2-207ENST00000458046 CSRNP3Q8WYN3 585 aa19.71■□□□□ 0.75
SYNE2-207ENST00000458046 UNC13AQ9UPW8 1703 aa19.7■□□□□ 0.74
SYNE2-207ENST00000458046 BICRAQ9NZM4 1560 aa19.63■□□□□ 0.73
SYNE2-207ENST00000458046 MYT1Q01538 1121 aa19.61■□□□□ 0.73
SYNE2-207ENST00000458046 TRIM41Q8WV44 630 aa19.56■□□□□ 0.72
SYNE2-207ENST00000458046 TIMELESSQ9UNS1 1208 aa19.55■□□□□ 0.72
SYNE2-207ENST00000458046 PELP1Q8IZL8 1130 aaKnown RBP19.54■□□□□ 0.72
SYNE2-207ENST00000458046 PABPN1Q86U42 306 aaKnown RBP eCLIP19.48■□□□□ 0.71
SYNE2-207ENST00000458046 ARXQ96QS3 562 aa19.47■□□□□ 0.71
SYNE2-207ENST00000458046 PHF23Q9BUL5 403 aaPredicted RBP19.45■□□□□ 0.7
SYNE2-207ENST00000458046 MYO15BQ96JP2 1530 aa19.43■□□□□ 0.7
SYNE2-207ENST00000458046 ERICH6Q7L0X2 663 aa19.43■□□□□ 0.7
SYNE2-207ENST00000458046 DCAF1Q9Y4B6 1507 aa19.31■□□□□ 0.68
SYNE2-207ENST00000458046 EIF4G1Q04637 1599 aaKnown RBP19.3■□□□□ 0.68
SYNE2-207ENST00000458046 TULP1O00294 542 aaPredicted RBP19.16■□□□□ 0.66
SYNE2-207ENST00000458046 TAOK2Q9UL54 1235 aa19.1■□□□□ 0.65
SYNE2-207ENST00000458046 PCGF6Q9BYE7 350 aa19.09■□□□□ 0.65
SYNE2-207ENST00000458046 HRCP23327 699 aa19.07■□□□□ 0.64
SYNE2-207ENST00000458046 LOC105371045A0A1W2PR82 267 aa19.05■□□□□ 0.64
SYNE2-207ENST00000458046 ERCC6Q03468 1493 aa18.99■□□□□ 0.63
SYNE2-207ENST00000458046 KLHL34Q8N239 644 aa18.92■□□□□ 0.62
SYNE2-207ENST00000458046 SCRIBQ14160 1630 aa18.87■□□□□ 0.61
SYNE2-207ENST00000458046 RANGAP1P46060 587 aaPredicted RBP18.86■□□□□ 0.61
SYNE2-207ENST00000458046 HOMEZQ8IX15 550 aa18.85■□□□□ 0.61
SYNE2-207ENST00000458046 RSF1Q96T23 1441 aaPredicted RBP18.82■□□□□ 0.6
SYNE2-207ENST00000458046 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
SYNE2-207ENST00000458046 TPRNQ4KMQ1 711 aa18.79■□□□□ 0.6
SYNE2-207ENST00000458046 PPARGC1BQ86YN6 1023 aaKnown RBP18.77■□□□□ 0.59
SYNE2-207ENST00000458046 THOC2Q8NI27 1593 aaKnown RBP18.71■□□□□ 0.59
SYNE2-207ENST00000458046 BCANQ96GW7 911 aa18.68■□□□□ 0.58
SYNE2-207ENST00000458046 EIF5BO60841 1220 aaKnown RBP18.64■□□□□ 0.57
SYNE2-207ENST00000458046 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
SYNE2-207ENST00000458046 PODXL2Q9NZ53 605 aa18.64■□□□□ 0.57
SYNE2-207ENST00000458046 TRIM26Q12899 539 aaPredicted RBP18.62■□□□□ 0.57
SYNE2-207ENST00000458046 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
SYNE2-207ENST00000458046 RIMBP3CA6NJZ7 1639 aa18.53■□□□□ 0.56
SYNE2-207ENST00000458046 RIMBP3BA6NNM3 1639 aa18.53■□□□□ 0.56
SYNE2-207ENST00000458046 RIMBP3Q9UFD9 1639 aa18.53■□□□□ 0.56
SYNE2-207ENST00000458046 SLC4A1APQ9BWU0 796 aaKnown RBP18.47■□□□□ 0.55
SYNE2-207ENST00000458046 MROH2BQ7Z745 1585 aa18.45■□□□□ 0.54
SYNE2-207ENST00000458046 GTF3C3Q9Y5Q9 886 aa18.44■□□□□ 0.54
SYNE2-207ENST00000458046 PLCB2Q00722 1185 aa18.43■□□□□ 0.54
SYNE2-207ENST00000458046 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
SYNE2-207ENST00000458046 WIZO95785 1651 aa18.34■□□□□ 0.53
SYNE2-207ENST00000458046 PLEKHG5O94827 1062 aa18.27■□□□□ 0.52
SYNE2-207ENST00000458046 HAP1P54257 671 aaPredicted RBP18.24■□□□□ 0.51
SYNE2-207ENST00000458046 ARHGEF11O15085 1522 aa18.22■□□□□ 0.51
SYNE2-207ENST00000458046 ZEB1P37275 1124 aaPredicted RBP18.2■□□□□ 0.5
SYNE2-207ENST00000458046 LAMC3Q9Y6N6 1575 aa18.2■□□□□ 0.5
SYNE2-207ENST00000458046 NCAPD3P42695 1498 aa18.2■□□□□ 0.5
SYNE2-207ENST00000458046 NPM2Q86SE8 214 aaKnown RBP18.17■□□□□ 0.5
SYNE2-207ENST00000458046 TRHP20396 242 aaPredicted RBP18.14■□□□□ 0.49
SYNE2-207ENST00000458046 ERCC6L2Q5T890 1561 aa18.12■□□□□ 0.49
SYNE2-207ENST00000458046 WDR62O43379 1518 aa18.07■□□□□ 0.48
SYNE2-207ENST00000458046 TMEM132AQ24JP5 1023 aa18.06■□□□□ 0.48
SYNE2-207ENST00000458046 ZBTB22O15209 634 aa18.06■□□□□ 0.48
SYNE2-207ENST00000458046 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
SYNE2-207ENST00000458046 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
SYNE2-207ENST00000458046 ABCC8Q09428 1581 aa18■□□□□ 0.47
SYNE2-207ENST00000458046 PDS5BQ9NTI5 1447 aa18■□□□□ 0.47
SYNE2-207ENST00000458046 KIF21AQ7Z4S6 1674 aa18■□□□□ 0.47
SYNE2-207ENST00000458046 TOP2AP11388 1531 aaKnown RBP17.99■□□□□ 0.47
SYNE2-207ENST00000458046 SOCS7O14512 581 aa17.99■□□□□ 0.47
SYNE2-207ENST00000458046 C14orf37Q86TY3 774 aa17.98■□□□□ 0.47
SYNE2-207ENST00000458046 SMARCA4P51532 1647 aa17.97■□□□□ 0.47
SYNE2-207ENST00000458046 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
SYNE2-207ENST00000458046 MRC2Q9UBG0 1479 aa17.96■□□□□ 0.46
SYNE2-207ENST00000458046 NESP48681 1621 aa17.95■□□□□ 0.46
SYNE2-207ENST00000458046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.95■□□□□ 0.46
SYNE2-207ENST00000458046 FBXO41Q8TF61 875 aa17.92■□□□□ 0.46
SYNE2-207ENST00000458046 LMTK3Q96Q04 1460 aa17.91■□□□□ 0.46
SYNE2-207ENST00000458046 SOGA1O94964 1423 aa17.89■□□□□ 0.46
SYNE2-207ENST00000458046 CCER1Q8TC90 406 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms