RNA–Protein interactions for RNA: ENST00000454568.1

RFC3P1-201, Transcript of replication factor C 3 pseudogene 1, humanhuman

BASIC

Gene RFC3P1, Length 682 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P1-201ENST00000454568 ST18O60284 1047 aa15.38■□□□□ 0.05
RFC3P1-201ENST00000454568 CDAN1Q8IWY9 1227 aa15.37■□□□□ 0.05
RFC3P1-201ENST00000454568 TMEM121BQ9BXQ6 578 aaPredicted RBP15.36■□□□□ 0.05
RFC3P1-201ENST00000454568 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
RFC3P1-201ENST00000454568 TOPBP1Q92547 1522 aa15.35■□□□□ 0.05
RFC3P1-201ENST00000454568 L3MBTL3Q96JM7 780 aaPredicted RBP15.35■□□□□ 0.05
RFC3P1-201ENST00000454568 PSEN1P49768 467 aa15.32■□□□□ 0.04
RFC3P1-201ENST00000454568 IFT140Q96RY7 1462 aa15.32■□□□□ 0.04
RFC3P1-201ENST00000454568 C3orf67Q6ZVT6 689 aa15.31■□□□□ 0.04
RFC3P1-201ENST00000454568 SPOCK2Q92563 424 aa15.31■□□□□ 0.04
RFC3P1-201ENST00000454568 DNMBPQ6XZF7 1577 aa15.31■□□□□ 0.04
RFC3P1-201ENST00000454568 PDCD7Q8N8D1 485 aaKnown RBP15.29■□□□□ 0.04
RFC3P1-201ENST00000454568 PDAP1Q13442 181 aaKnown RBP15.28■□□□□ 0.04
RFC3P1-201ENST00000454568 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.27■□□□□ 0.04
RFC3P1-201ENST00000454568 ZNF608Q9ULD9 1512 aaPredicted RBP15.27■□□□□ 0.03
RFC3P1-201ENST00000454568 TRIM41Q8WV44 630 aa15.25■□□□□ 0.03
RFC3P1-201ENST00000454568 CIZ1Q9ULV3 898 aaPredicted RBP15.24■□□□□ 0.03
RFC3P1-201ENST00000454568 IFNLR1Q8IU57 520 aaPredicted RBP15.21■□□□□ 0.03
RFC3P1-201ENST00000454568 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
RFC3P1-201ENST00000454568 EIF4G3O43432 1585 aaKnown RBP15.19■□□□□ 0.02
RFC3P1-201ENST00000454568 AQRO60306 1485 aaKnown RBP eCLIP15.19■□□□□ 0.02
RFC3P1-201ENST00000454568 SOGA1O94964 1423 aa15.17■□□□□ 0.02
RFC3P1-201ENST00000454568 TARBP1Q13395 1621 aaKnown RBP15.17■□□□□ 0.02
RFC3P1-201ENST00000454568 RAD54L2Q9Y4B4 1467 aa15.16■□□□□ 0.02
RFC3P1-201ENST00000454568 G3V3G9 751 aa15.16■□□□□ 0.02
RFC3P1-201ENST00000454568 ILDR1Q86SU0 546 aaPredicted RBP15.15■□□□□ 0.02
RFC3P1-201ENST00000454568 FGD5Q6ZNL6 1462 aa15.14■□□□□ 0.01
RFC3P1-201ENST00000454568 TDRD9Q8NDG6 1382 aaKnown RBP15.13■□□□□ 0.01
RFC3P1-201ENST00000454568 CUX1P39880 1505 aa15.12■□□□□ 0.01
RFC3P1-201ENST00000454568 CABP2Q9NPB3 220 aa15.12■□□□□ 0.01
RFC3P1-201ENST00000454568 MARVELD3Q96A59 401 aa15.08■□□□□ 0
RFC3P1-201ENST00000454568 CHD1O14646 1710 aa15.06■□□□□ 0
RFC3P1-201ENST00000454568 EMP3P54852 163 aa15.05■□□□□ -0
RFC3P1-201ENST00000454568 BOLA1Q9Y3E2 137 aa15.05■□□□□ -0
RFC3P1-201ENST00000454568 WDR97A6NE52 1622 aa15.03■□□□□ -0
RFC3P1-201ENST00000454568 CHMP7Q8WUX9 453 aaPredicted RBP15.03■□□□□ -0
RFC3P1-201ENST00000454568 RIMBP3CA6NJZ7 1639 aa15.03■□□□□ -0
RFC3P1-201ENST00000454568 RIMBP3BA6NNM3 1639 aa15.03■□□□□ -0
RFC3P1-201ENST00000454568 RIMBP3Q9UFD9 1639 aa15.03■□□□□ -0
RFC3P1-201ENST00000454568 SNAPC4Q5SXM2 1469 aa15.01□□□□□ -0.01
RFC3P1-201ENST00000454568 DPY19L2Q6NUT2 758 aa15□□□□□ -0.01
RFC3P1-201ENST00000454568 GRIN2BQ13224 1484 aa15□□□□□ -0.01
RFC3P1-201ENST00000454568 ARHGEF11O15085 1522 aa14.99□□□□□ -0.01
RFC3P1-201ENST00000454568 GAPVD1Q14C86 1478 aa14.98□□□□□ -0.01
RFC3P1-201ENST00000454568 SPNS2Q8IVW8 549 aa14.98□□□□□ -0.01
RFC3P1-201ENST00000454568 WRNQ14191 1432 aaPredicted RBP eCLIP14.98□□□□□ -0.01
RFC3P1-201ENST00000454568 MAGI1Q96QZ7 1491 aaPredicted RBP14.97□□□□□ -0.01
RFC3P1-201ENST00000454568 MMRN1Q13201 1228 aa14.96□□□□□ -0.01
RFC3P1-201ENST00000454568 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
RFC3P1-201ENST00000454568 PBRM1Q86U86 1689 aa14.95□□□□□ -0.02
RFC3P1-201ENST00000454568 ABCA10Q8WWZ4 1543 aa14.95□□□□□ -0.02
RFC3P1-201ENST00000454568 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
RFC3P1-201ENST00000454568 SYNJ2O15056 1496 aa14.93□□□□□ -0.02
RFC3P1-201ENST00000454568 BIVM-ERCC5R4GMW8 1640 aa14.92□□□□□ -0.02
RFC3P1-201ENST00000454568 SYNJ1O43426 1573 aa14.92□□□□□ -0.02
RFC3P1-201ENST00000454568 HS3ST6Q96QI5 342 aa14.91□□□□□ -0.02
RFC3P1-201ENST00000454568 FAM205CA6NFA0 338 aa14.9□□□□□ -0.02
RFC3P1-201ENST00000454568 ZNF710Q8N1W2 664 aa14.9□□□□□ -0.02
RFC3P1-201ENST00000454568 EFCAB3Q8N7B9 438 aa14.9□□□□□ -0.02
RFC3P1-201ENST00000454568 ABCA5Q8WWZ7 1642 aa14.9□□□□□ -0.02
RFC3P1-201ENST00000454568 DOK7Q18PE1 504 aa14.89□□□□□ -0.03
RFC3P1-201ENST00000454568 RIMBP2O15034 1052 aa14.86□□□□□ -0.03
RFC3P1-201ENST00000454568 RIOK3O14730 519 aaKnown RBP14.85□□□□□ -0.03
RFC3P1-201ENST00000454568 SOX12O15370 315 aa14.85□□□□□ -0.03
RFC3P1-201ENST00000454568 CLASP1Q7Z460 1538 aa14.85□□□□□ -0.03
RFC3P1-201ENST00000454568 HOXB3P14651 431 aaPredicted RBP14.84□□□□□ -0.03
RFC3P1-201ENST00000454568 ARAP1Q96P48 1450 aa14.83□□□□□ -0.03
RFC3P1-201ENST00000454568 HOXB1P14653 301 aaPredicted RBP14.82□□□□□ -0.04
RFC3P1-201ENST00000454568 VGFO15240 615 aaPredicted RBP14.81□□□□□ -0.04
RFC3P1-201ENST00000454568 GRIN2AQ12879 1464 aa14.81□□□□□ -0.04
RFC3P1-201ENST00000454568 ADAMTS12P58397 1594 aa14.79□□□□□ -0.04
RFC3P1-201ENST00000454568 FHAD1B1AJZ9 1412 aa14.78□□□□□ -0.04
RFC3P1-201ENST00000454568 KRTAP3-3Q9BYR6 98 aa14.78□□□□□ -0.04
RFC3P1-201ENST00000454568 KRTAP3-2Q9BYR7 98 aa14.78□□□□□ -0.04
RFC3P1-201ENST00000454568 TAOK2Q9UL54 1235 aa14.78□□□□□ -0.04
RFC3P1-201ENST00000454568 ERICH3Q5RHP9 1530 aa14.77□□□□□ -0.04
RFC3P1-201ENST00000454568 POTEB3A0JP26 581 aa14.77□□□□□ -0.05
RFC3P1-201ENST00000454568 POTEBQ6S5H4 581 aa14.77□□□□□ -0.05
RFC3P1-201ENST00000454568 MICALL2Q8IY33 904 aa14.76□□□□□ -0.05
RFC3P1-201ENST00000454568 ERBB3P21860 1342 aa14.75□□□□□ -0.05
RFC3P1-201ENST00000454568 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.74□□□□□ -0.05
RFC3P1-201ENST00000454568 ZFP91Q96JP5 570 aaPredicted RBP14.74□□□□□ -0.05
RFC3P1-201ENST00000454568 ZSWIM6Q9HCJ5 1215 aa14.74□□□□□ -0.05
RFC3P1-201ENST00000454568 CEP170Q5SW79 1584 aa14.73□□□□□ -0.05
RFC3P1-201ENST00000454568 NUP160Q12769 1436 aa14.72□□□□□ -0.05
RFC3P1-201ENST00000454568 RNF25Q96BH1 459 aaPredicted RBP14.71□□□□□ -0.05
RFC3P1-201ENST00000454568 KIF27Q86VH2 1401 aa14.69□□□□□ -0.06
RFC3P1-201ENST00000454568 ERCC6L2Q5T890 1561 aa14.65□□□□□ -0.06
RFC3P1-201ENST00000454568 NLRP6P59044 892 aa14.65□□□□□ -0.06
RFC3P1-201ENST00000454568 JPH4Q96JJ6 628 aa14.65□□□□□ -0.06
RFC3P1-201ENST00000454568 PHF8Q9UPP1 1060 aa14.65□□□□□ -0.06
RFC3P1-201ENST00000454568 IGF1RP08069 1367 aa14.64□□□□□ -0.07
RFC3P1-201ENST00000454568 MS4A4AQ96JQ5 239 aa14.64□□□□□ -0.07
RFC3P1-201ENST00000454568 TMEM92Q6UXU6 159 aa14.62□□□□□ -0.07
RFC3P1-201ENST00000454568 PRG4Q92954 1404 aaPredicted RBP14.62□□□□□ -0.07
RFC3P1-201ENST00000454568 SHROOM2Q13796 1616 aa14.62□□□□□ -0.07
RFC3P1-201ENST00000454568 VARS2Q5ST30 1063 aaKnown RBP14.61□□□□□ -0.07
RFC3P1-201ENST00000454568 CUL7Q14999 1698 aa14.6□□□□□ -0.07
RFC3P1-201ENST00000454568 CARMIL1Q5VZK9 1371 aa14.58□□□□□ -0.08
RFC3P1-201ENST00000454568 RUSC2Q8N2Y8 1516 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms