RNA–Protein interactions for RNA: ENST00000424339.1

EPHA4-206, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 492 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-206ENST00000424339 SYNJ1O43426 1573 aa11.88□□□□□ -0.51
EPHA4-206ENST00000424339 POLA1P09884 1462 aaPredicted RBP11.87□□□□□ -0.51
EPHA4-206ENST00000424339 FGD5Q6ZNL6 1462 aa11.87□□□□□ -0.51
EPHA4-206ENST00000424339 IFT140Q96RY7 1462 aa11.87□□□□□ -0.51
EPHA4-206ENST00000424339 MARVELD3Q96A59 401 aa11.86□□□□□ -0.51
EPHA4-206ENST00000424339 PYGBP11216 843 aa11.85□□□□□ -0.51
EPHA4-206ENST00000424339 WDR97A6NE52 1622 aa11.85□□□□□ -0.51
EPHA4-206ENST00000424339 SOGA1O94964 1423 aa11.83□□□□□ -0.52
EPHA4-206ENST00000424339 TRIM41Q8WV44 630 aa11.82□□□□□ -0.52
EPHA4-206ENST00000424339 PCDHB8Q9UN66 801 aa11.82□□□□□ -0.52
EPHA4-206ENST00000424339 TARBP1Q13395 1621 aaKnown RBP11.82□□□□□ -0.52
EPHA4-206ENST00000424339 ABCA10Q8WWZ4 1543 aa11.81□□□□□ -0.52
EPHA4-206ENST00000424339 RAD54L2Q9Y4B4 1467 aa11.76□□□□□ -0.53
EPHA4-206ENST00000424339 GOLGA2Q08379 1002 aa11.76□□□□□ -0.53
EPHA4-206ENST00000424339 C3orf67Q6ZVT6 689 aa11.76□□□□□ -0.53
EPHA4-206ENST00000424339 EMP3P54852 163 aa11.75□□□□□ -0.53
EPHA4-206ENST00000424339 L3MBTL3Q96JM7 780 aaPredicted RBP11.75□□□□□ -0.53
EPHA4-206ENST00000424339 MKRN3Q13064 507 aaKnown RBP11.73□□□□□ -0.53
EPHA4-206ENST00000424339 KIF27Q86VH2 1401 aa11.73□□□□□ -0.53
EPHA4-206ENST00000424339 ABCA5Q8WWZ7 1642 aa11.72□□□□□ -0.53
EPHA4-206ENST00000424339 EIF4G3O43432 1585 aaKnown RBP11.72□□□□□ -0.53
EPHA4-206ENST00000424339 GAPVD1Q14C86 1478 aa11.71□□□□□ -0.53
EPHA4-206ENST00000424339 EEA1Q15075 1411 aa11.71□□□□□ -0.53
EPHA4-206ENST00000424339 ZNF608Q9ULD9 1512 aaPredicted RBP11.7□□□□□ -0.54
EPHA4-206ENST00000424339 GRIN2BQ13224 1484 aa11.7□□□□□ -0.54
EPHA4-206ENST00000424339 TDRD9Q8NDG6 1382 aaKnown RBP11.69□□□□□ -0.54
EPHA4-206ENST00000424339 FKBP8Q14318 412 aa11.69□□□□□ -0.54
EPHA4-206ENST00000424339 ERICH3Q5RHP9 1530 aa11.69□□□□□ -0.54
EPHA4-206ENST00000424339 PDCD7Q8N8D1 485 aaKnown RBP11.68□□□□□ -0.54
EPHA4-206ENST00000424339 FAM205CA6NFA0 338 aa11.67□□□□□ -0.54
EPHA4-206ENST00000424339 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
EPHA4-206ENST00000424339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.67□□□□□ -0.54
EPHA4-206ENST00000424339 AQRO60306 1485 aaKnown RBP eCLIP11.67□□□□□ -0.54
EPHA4-206ENST00000424339 MAGI1Q96QZ7 1491 aaPredicted RBP11.67□□□□□ -0.54
EPHA4-206ENST00000424339 PBRM1Q86U86 1689 aa11.67□□□□□ -0.54
EPHA4-206ENST00000424339 HS3ST6Q96QI5 342 aa11.65□□□□□ -0.54
EPHA4-206ENST00000424339 GSE1Q14687 1217 aa11.64□□□□□ -0.55
EPHA4-206ENST00000424339 KLHL34Q8N239 644 aa11.64□□□□□ -0.55
EPHA4-206ENST00000424339 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
EPHA4-206ENST00000424339 CUL7Q14999 1698 aa11.64□□□□□ -0.55
EPHA4-206ENST00000424339 IGF1RP08069 1367 aa11.61□□□□□ -0.55
EPHA4-206ENST00000424339 FHAD1B1AJZ9 1412 aa11.6□□□□□ -0.55
EPHA4-206ENST00000424339 SNAPC4Q5SXM2 1469 aa11.6□□□□□ -0.55
EPHA4-206ENST00000424339 POTEB3A0JP26 581 aa11.6□□□□□ -0.55
EPHA4-206ENST00000424339 POTEBQ6S5H4 581 aa11.6□□□□□ -0.55
EPHA4-206ENST00000424339 ADAMTS12P58397 1594 aa11.59□□□□□ -0.55
EPHA4-206ENST00000424339 SYNJ2O15056 1496 aa11.59□□□□□ -0.55
EPHA4-206ENST00000424339 PSEN1P49768 467 aa11.59□□□□□ -0.55
EPHA4-206ENST00000424339 KRTAP3-3Q9BYR6 98 aa11.59□□□□□ -0.55
EPHA4-206ENST00000424339 KRTAP3-2Q9BYR7 98 aa11.59□□□□□ -0.55
EPHA4-206ENST00000424339 CARMIL1Q5VZK9 1371 aa11.56□□□□□ -0.56
EPHA4-206ENST00000424339 RUSC2Q8N2Y8 1516 aa11.56□□□□□ -0.56
EPHA4-206ENST00000424339 G3V3G9 751 aa11.56□□□□□ -0.56
EPHA4-206ENST00000424339 CHRM1P11229 460 aaPredicted RBP11.56□□□□□ -0.56
EPHA4-206ENST00000424339 CHMP7Q8WUX9 453 aaPredicted RBP11.54□□□□□ -0.56
EPHA4-206ENST00000424339 PRXQ9BXM0 1461 aa11.54□□□□□ -0.56
EPHA4-206ENST00000424339 GRIN2AQ12879 1464 aa11.53□□□□□ -0.56
EPHA4-206ENST00000424339 RAPGEF2Q9Y4G8 1499 aa11.53□□□□□ -0.56
EPHA4-206ENST00000424339 KIF21BO75037 1637 aa11.52□□□□□ -0.57
EPHA4-206ENST00000424339 CHD1O14646 1710 aa11.52□□□□□ -0.57
EPHA4-206ENST00000424339 DPY19L2Q6NUT2 758 aa11.51□□□□□ -0.57
EPHA4-206ENST00000424339 ZNF710Q8N1W2 664 aa11.51□□□□□ -0.57
EPHA4-206ENST00000424339 PDAP1Q13442 181 aaKnown RBP11.48□□□□□ -0.57
EPHA4-206ENST00000424339 BOLA1Q9Y3E2 137 aa11.48□□□□□ -0.57
EPHA4-206ENST00000424339 NUP160Q12769 1436 aa11.48□□□□□ -0.57
EPHA4-206ENST00000424339 GOLGA3Q08378 1498 aa11.46□□□□□ -0.57
EPHA4-206ENST00000424339 ERBB3P21860 1342 aa11.46□□□□□ -0.57
EPHA4-206ENST00000424339 ILDR1Q86SU0 546 aaPredicted RBP11.46□□□□□ -0.57
EPHA4-206ENST00000424339 FAM9AQ8IZU1 332 aaPredicted RBP11.46□□□□□ -0.57
EPHA4-206ENST00000424339 CABP2Q9NPB3 220 aa11.45□□□□□ -0.58
EPHA4-206ENST00000424339 HOXB3P14651 431 aaPredicted RBP11.44□□□□□ -0.58
EPHA4-206ENST00000424339 VASPP50552 380 aaPredicted RBP11.44□□□□□ -0.58
EPHA4-206ENST00000424339 KIAA0586Q9BVV6 1533 aa11.44□□□□□ -0.58
EPHA4-206ENST00000424339 CEP170Q5SW79 1584 aa11.43□□□□□ -0.58
EPHA4-206ENST00000424339 HOXB1P14653 301 aaPredicted RBP11.43□□□□□ -0.58
EPHA4-206ENST00000424339 DOK7Q18PE1 504 aa11.43□□□□□ -0.58
EPHA4-206ENST00000424339 CLASP1Q7Z460 1538 aa11.42□□□□□ -0.58
EPHA4-206ENST00000424339 CTTNBP2Q8WZ74 1663 aa11.42□□□□□ -0.58
EPHA4-206ENST00000424339 IQGAP2Q13576 1575 aa11.4□□□□□ -0.58
EPHA4-206ENST00000424339 RIMBP2O15034 1052 aa11.39□□□□□ -0.59
EPHA4-206ENST00000424339 RNF166Q96A37 237 aaPredicted RBP11.38□□□□□ -0.59
EPHA4-206ENST00000424339 CIZ1Q9ULV3 898 aaPredicted RBP11.37□□□□□ -0.59
EPHA4-206ENST00000424339 SHROOM2Q13796 1616 aa11.37□□□□□ -0.59
EPHA4-206ENST00000424339 UBTFP17480 764 aaKnown RBP11.36□□□□□ -0.59
EPHA4-206ENST00000424339 UGGT2Q9NYU1 1516 aa11.35□□□□□ -0.59
EPHA4-206ENST00000424339 TNIKQ9UKE5 1360 aa11.35□□□□□ -0.59
EPHA4-206ENST00000424339 VARS2Q5ST30 1063 aaKnown RBP11.34□□□□□ -0.59
EPHA4-206ENST00000424339 JPH4Q96JJ6 628 aa11.34□□□□□ -0.59
EPHA4-206ENST00000424339 MYT1LQ9UL68 1186 aa11.33□□□□□ -0.6
EPHA4-206ENST00000424339 CARMIL2Q6F5E8 1435 aa11.33□□□□□ -0.6
EPHA4-206ENST00000424339 EFCAB5A4FU69 1503 aa11.32□□□□□ -0.6
EPHA4-206ENST00000424339 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
EPHA4-206ENST00000424339 PRG4Q92954 1404 aaPredicted RBP11.29□□□□□ -0.6
EPHA4-206ENST00000424339 DNAJC5Q9H3Z4 198 aa11.28□□□□□ -0.6
EPHA4-206ENST00000424339 ARHGEF11O15085 1522 aa11.28□□□□□ -0.6
EPHA4-206ENST00000424339 SAMD9Q5K651 1589 aa11.28□□□□□ -0.6
EPHA4-206ENST00000424339 KIAA0556O60303 1618 aa11.27□□□□□ -0.61
EPHA4-206ENST00000424339 DISP1Q96F81 1524 aa11.26□□□□□ -0.61
EPHA4-206ENST00000424339 ZNF687Q8N1G0 1237 aa11.26□□□□□ -0.61
EPHA4-206ENST00000424339 EFCAB3Q8N7B9 438 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms