RNA–Protein interactions for RNA: ENST00000424339.1

EPHA4-206, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 492 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-206ENST00000424339 AEBP2Q6ZN18 517 aaPredicted RBP26■■□□□ 1.75
EPHA4-206ENST00000424339 CHIC1Q5VXU3 224 aa24.39■■□□□ 1.49
EPHA4-206ENST00000424339 SENP3Q9H4L4 574 aaPredicted RBP22.32■■□□□ 1.16
EPHA4-206ENST00000424339 PHF23Q9BUL5 403 aaPredicted RBP21.99■■□□□ 1.11
EPHA4-206ENST00000424339 FOXD1Q16676 465 aa20.83■□□□□ 0.93
EPHA4-206ENST00000424339 POTEDQ86YR6 584 aa19.97■□□□□ 0.79
EPHA4-206ENST00000424339 MSH5O43196 834 aa19.71■□□□□ 0.75
EPHA4-206ENST00000424339 PIAS4Q8N2W9 510 aaPredicted RBP19.39■□□□□ 0.69
EPHA4-206ENST00000424339 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
EPHA4-206ENST00000424339 PPP6R1Q9UPN7 881 aa19.13■□□□□ 0.65
EPHA4-206ENST00000424339 ADRA2BP18089 450 aa19.07■□□□□ 0.64
EPHA4-206ENST00000424339 MAPK8IP2Q13387 824 aaPredicted RBP17.67■□□□□ 0.42
EPHA4-206ENST00000424339 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
EPHA4-206ENST00000424339 SCAF1Q9H7N4 1312 aaKnown RBP17.54■□□□□ 0.4
EPHA4-206ENST00000424339 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
EPHA4-206ENST00000424339 DCAF8L1A6NGE4 600 aa17.04■□□□□ 0.32
EPHA4-206ENST00000424339 PPP4R3CPQ6ZMV5 832 aa16.81■□□□□ 0.28
EPHA4-206ENST00000424339 HOXD11P31277 338 aaPredicted RBP16.76■□□□□ 0.27
EPHA4-206ENST00000424339 RNF39Q9H2S5 420 aa16.73■□□□□ 0.27
EPHA4-206ENST00000424339 CNKSR2Q8WXI2 1034 aa16.6■□□□□ 0.25
EPHA4-206ENST00000424339 NISCHQ9Y2I1 1504 aa16.56■□□□□ 0.24
EPHA4-206ENST00000424339 RNF216Q9NWF9 866 aaPredicted RBP16.55■□□□□ 0.24
EPHA4-206ENST00000424339 C1QBPQ07021 282 aaKnown RBP16.51■□□□□ 0.23
EPHA4-206ENST00000424339 DNAJC5BQ9UF47 199 aa16.27■□□□□ 0.2
EPHA4-206ENST00000424339 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
EPHA4-206ENST00000424339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.09■□□□□ 0.17
EPHA4-206ENST00000424339 NPM3O75607 178 aaKnown RBP15.76■□□□□ 0.11
EPHA4-206ENST00000424339 CAPN15O75808 1086 aa15.59■□□□□ 0.09
EPHA4-206ENST00000424339 POTEHQ6S545 545 aa15.58■□□□□ 0.08
EPHA4-206ENST00000424339 U3KPZ7 1027 aaPredicted RBP15.58■□□□□ 0.08
EPHA4-206ENST00000424339 DSG3P32926 999 aa15.53■□□□□ 0.08
EPHA4-206ENST00000424339 SPINK5Q9NQ38 1064 aaPredicted RBP15.52■□□□□ 0.08
EPHA4-206ENST00000424339 TRHP20396 242 aaPredicted RBP15.24■□□□□ 0.03
EPHA4-206ENST00000424339 APLP2Q06481 763 aa15.22■□□□□ 0.03
EPHA4-206ENST00000424339 ABCB7O75027 752 aa15.16■□□□□ 0.02
EPHA4-206ENST00000424339 SLC4A2P04920 1241 aa15.15■□□□□ 0.02
EPHA4-206ENST00000424339 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
EPHA4-206ENST00000424339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.09■□□□□ 0.01
EPHA4-206ENST00000424339 HNRNPUL2Q1KMD3 747 aaKnown RBP15.09■□□□□ 0.01
EPHA4-206ENST00000424339 KCNA4P22459 653 aa15.06■□□□□ 0
EPHA4-206ENST00000424339 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
EPHA4-206ENST00000424339 RBM42Q9BTD8 480 aaKnown RBP14.88□□□□□ -0.03
EPHA4-206ENST00000424339 POLA2Q14181 598 aa14.71□□□□□ -0.05
EPHA4-206ENST00000424339 CHRDL2Q6WN34 429 aa14.71□□□□□ -0.05
EPHA4-206ENST00000424339 CCDC180Q9P1Z9 1646 aa14.7□□□□□ -0.06
EPHA4-206ENST00000424339 MYCNP04198 464 aaPredicted RBP14.61□□□□□ -0.07
EPHA4-206ENST00000424339 AKT1S1Q96B36 256 aa14.43□□□□□ -0.1
EPHA4-206ENST00000424339 SP7Q8TDD2 431 aaPredicted RBP14.39□□□□□ -0.11
EPHA4-206ENST00000424339 ZBTB12Q9Y330 459 aaPredicted RBP14.37□□□□□ -0.11
EPHA4-206ENST00000424339 REM2Q8IYK8 340 aaPredicted RBP14.29□□□□□ -0.12
EPHA4-206ENST00000424339 ATF5Q9Y2D1 282 aaPredicted RBP14.28□□□□□ -0.12
EPHA4-206ENST00000424339 PIP4P2Q8N4L2 257 aa14.25□□□□□ -0.13
EPHA4-206ENST00000424339 HAX1O00165 279 aa14.21□□□□□ -0.13
EPHA4-206ENST00000424339 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
EPHA4-206ENST00000424339 OSCARQ8IYS5 282 aa14.2□□□□□ -0.14
EPHA4-206ENST00000424339 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
EPHA4-206ENST00000424339 PITPNM1O00562 1244 aa14.11□□□□□ -0.15
EPHA4-206ENST00000424339 FXR2P51116 673 aaKnown RBP eCLIP14.08□□□□□ -0.16
EPHA4-206ENST00000424339 ABCC9O60706 1549 aa14.03□□□□□ -0.16
EPHA4-206ENST00000424339 EVX2Q03828 476 aa13.89□□□□□ -0.19
EPHA4-206ENST00000424339 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
EPHA4-206ENST00000424339 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
EPHA4-206ENST00000424339 FBLN2P98095 1184 aa13.86□□□□□ -0.19
EPHA4-206ENST00000424339 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
EPHA4-206ENST00000424339 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
EPHA4-206ENST00000424339 ATXN8OSP0DMR3 200 aa13.83□□□□□ -0.2
EPHA4-206ENST00000424339 CLEC11AQ9Y240 323 aa13.81□□□□□ -0.2
EPHA4-206ENST00000424339 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
EPHA4-206ENST00000424339 DCAF1Q9Y4B6 1507 aa13.8□□□□□ -0.2
EPHA4-206ENST00000424339 ZBTB22O15209 634 aa13.79□□□□□ -0.2
EPHA4-206ENST00000424339 PRKAR2AP13861 404 aaKnown RBP13.79□□□□□ -0.2
EPHA4-206ENST00000424339 NACADO15069 1562 aa13.76□□□□□ -0.21
EPHA4-206ENST00000424339 SPDYE1Q8NFV5 336 aaPredicted RBP13.76□□□□□ -0.21
EPHA4-206ENST00000424339 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.22
EPHA4-206ENST00000424339 ZNF692Q9BU19 519 aaPredicted RBP13.69□□□□□ -0.22
EPHA4-206ENST00000424339 C19orf67A6NJJ6 358 aa13.65□□□□□ -0.22
EPHA4-206ENST00000424339 DCAF8L2P0C7V8 631 aa13.65□□□□□ -0.22
EPHA4-206ENST00000424339 GABBR2O75899 941 aa13.6□□□□□ -0.23
EPHA4-206ENST00000424339 MKRN4PQ13434 485 aaPredicted RBP13.58□□□□□ -0.24
EPHA4-206ENST00000424339 SSUH2Q9Y2M2 353 aa13.57□□□□□ -0.24
EPHA4-206ENST00000424339 LHX8Q68G74 356 aa13.54□□□□□ -0.24
EPHA4-206ENST00000424339 CHADLQ6NUI6 762 aa13.53□□□□□ -0.24
EPHA4-206ENST00000424339 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
EPHA4-206ENST00000424339 PABPN1Q86U42 306 aaKnown RBP eCLIP13.43□□□□□ -0.26
EPHA4-206ENST00000424339 UNC13AQ9UPW8 1703 aa13.33□□□□□ -0.28
EPHA4-206ENST00000424339 CD44P16070 742 aaKnown RBP13.32□□□□□ -0.28
EPHA4-206ENST00000424339 SCRIBQ14160 1630 aa13.31□□□□□ -0.28
EPHA4-206ENST00000424339 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
EPHA4-206ENST00000424339 CLCN6P51797 869 aa13.26□□□□□ -0.29
EPHA4-206ENST00000424339 SHROOM4Q9ULL8 1493 aa13.25□□□□□ -0.29
EPHA4-206ENST00000424339 POTEIP0CG38 1075 aa13.24□□□□□ -0.29
EPHA4-206ENST00000424339 BICRAQ9NZM4 1560 aa13.2□□□□□ -0.3
EPHA4-206ENST00000424339 DCBLD2Q96PD2 775 aa13.2□□□□□ -0.3
EPHA4-206ENST00000424339 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
EPHA4-206ENST00000424339 ZRANB1Q9UGI0 708 aa13.09□□□□□ -0.31
EPHA4-206ENST00000424339 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
EPHA4-206ENST00000424339 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
EPHA4-206ENST00000424339 CREBZFQ9NS37 354 aa12.98□□□□□ -0.33
EPHA4-206ENST00000424339 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
EPHA4-206ENST00000424339 PAK3O75914 559 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms