RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	PRD1	P25375	712 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	YME1	P32795	747 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	ECM15	P35195	104 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	YHR210C	P38893	341 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	YJL068C	P40363	299 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	CUL3	P53202	744 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	TOF2	Q02208	771 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	GLO2	Q05584	274 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	THI20	Q08224	551 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	THP1	Q08231	455 aa		3.51	□□□□□ -1.85
CUP9	YPL177C	MET17	P06106	444 aa		3.5	□□□□□ -1.85
CUP9	YPL177C	SHP1	P34223	423 aa		3.5	□□□□□ -1.85
CUP9	YPL177C	RRP3	P38712	501 aa	Known RBP	3.5	□□□□□ -1.85
CUP9	YPL177C	CAF130	P53280	1122 aa	Predicted RBP	3.5	□□□□□ -1.85
CUP9	YPL177C	MRPL19	P53875	158 aa		3.5	□□□□□ -1.85
CUP9	YPL177C	MDM1	Q01846	1127 aa		3.5	□□□□□ -1.85
CUP9	YPL177C	TSR2	Q06672	205 aa	Known RBP	3.5	□□□□□ -1.85
CUP9	YPL177C	INH1	P01097	85 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	APE1	P14904	514 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	GPI10	P30777	616 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	VPS17	P32913	551 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	CST26	P38226	397 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	OSH3	P38713	996 aa	Known RBP	3.49	□□□□□ -1.85
CUP9	YPL177C	VPS52	P39904	641 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	TIF4631	P39935	952 aa	Known RBP	3.49	□□□□□ -1.85
CUP9	YPL177C	ARF3	P40994	183 aa	RIP-Chip data	3.49	□□□□□ -1.85	not detected
CUP9	YPL177C	IRC6	P43615	237 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	YJR154W	P47181	346 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	FIN1	Q03898	291 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	YEH2	Q07950	538 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	DAP1	Q12091	152 aa		3.49	□□□□□ -1.85
CUP9	YPL177C	MRS3	P10566	314 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	PMS1	P14242	873 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	PRP2	P20095	876 aa	Predicted RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	MRE11	P32829	692 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	MSN2	P33748	704 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	BNA4	P38169	460 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	TCM62	P38228	572 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	KEL1	P38853	1164 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	YJL070C	P40361	888 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	MET18	P40469	1032 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	DIM1	P41819	318 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	ALK1	P43633	760 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.48	□□□□□ -1.85	not detected
CUP9	YPL177C	IKS1	P47042	667 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	ALT2	P52892	507 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	YGL082W	P53155	381 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	ZPR1	P53303	486 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	RLI1	Q03195	608 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	SLD5	Q03406	294 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	MRD1	Q06106	887 aa	Known RBP	3.48	□□□□□ -1.85
CUP9	YPL177C	TIP41	Q12199	356 aa		3.48	□□□□□ -1.85
CUP9	YPL177C	SUC2	P00724	532 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	COR1	P07256	457 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	CKA1	P15790	372 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	PAP1	P29468	568 aa	Known RBP	3.47	□□□□□ -1.85
CUP9	YPL177C	ATS1	P31386	333 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	FRE1	P32791	686 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	PMT1	P33775	817 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	SIP2	P34164	415 aa	Known RBP	3.47	□□□□□ -1.85
CUP9	YPL177C	YBR139W	P38109	508 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	DUG2	P38149	878 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	MUM2	P38236	366 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	MBB1	P39534	108 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	CSM2	P40465	213 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	ROK1	P45818	564 aa	Predicted RBP	3.47	□□□□□ -1.85
CUP9	YPL177C	HEF3	P53978	1044 aa	Known RBP	3.47	□□□□□ -1.85
CUP9	YPL177C	PDS5	Q04264	1277 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	PHO92	Q06390	306 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	RIM20	Q12033	661 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	RTP1	Q12751	981 aa		3.47	□□□□□ -1.85
CUP9	YPL177C	CDC31	P06704	161 aa	Known RBP	3.46	□□□□□ -1.86
CUP9	YPL177C	BUD14	P27637	709 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	VID24	P38263	362 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	YTA12	P40341	825 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	TWF1	P53250	332 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	JJJ1	P53863	590 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	TAF11	Q04226	346 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	IVY1	Q04934	453 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	SYO1	Q07395	620 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	ATG29	Q12092	213 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	SEC39	Q12745	709 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	YDL007C-A	Q2V2Q0	85 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	YML133C	Q03099	1374 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	YLL067C	Q07888	1374 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	YLL066C	Q99208	1374 aa		3.46	□□□□□ -1.86
CUP9	YPL177C	MES1	P00958	751 aa	Known RBP	3.45	□□□□□ -1.86
CUP9	YPL177C	RPL31B	P0C2H9	113 aa	Known RBP	3.45	□□□□□ -1.86
CUP9	YPL177C	YML002W	P0CF17	737 aa		3.45	□□□□□ -1.86
CUP9	YPL177C	AMD1	P15274	810 aa	Known RBP	3.45	□□□□□ -1.86
CUP9	YPL177C	ROX1	P25042	368 aa		3.45	□□□□□ -1.86
CUP9	YPL177C	YNK1	P36010	153 aa	Known RBP	3.45	□□□□□ -1.86
CUP9	YPL177C	CRZ1	P53968	678 aa		3.45	□□□□□ -1.86
CUP9	YPL177C	GRX6	Q12438	231 aa		3.45	□□□□□ -1.86
CUP9	YPL177C	RAV1	P47104	1357 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	YCR022C	P25620	114 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	NDC1	P32500	655 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	UTR4	P32626	227 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	PTR2	P32901	601 aa		3.44	□□□□□ -1.86
CUP9	YPL177C	CMC1	P36064	111 aa		3.44	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms