RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	YGL138C	P53122	345 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	RPT4	P53549	437 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	IPI3	P53877	555 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	INA17	Q02888	182 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	ACL4	Q03771	387 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	COQ11	Q05892	277 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	YLR297W	Q05899	129 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	ADE13	Q05911	482 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	SMD2	Q06217	110 aa	Known RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	CUR1	Q06469	252 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	YFH1	Q07540	174 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	GPN2	Q08726	347 aa	Predicted RBP	4.83	□□□□□ -1.64
ROT1	YMR200W	AEP3	Q12089	606 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	LDB17	Q12342	491 aa		4.83	□□□□□ -1.64
ROT1	YMR200W	SGS1	P35187	1447 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	MF(ALPHA)1	P01149	165 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	ILV2	P07342	687 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	MSS116	P15424	664 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	SRV2	P17555	526 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	SPO7	P18410	259 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	URA4	P20051	364 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	YCR061W	P25639	631 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	FUB1	P25659	250 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	MCM4	P30665	933 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	NDI1	P32340	513 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	MSN4	P33749	630 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	TPO5	P36029	618 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	MNN2	P38069	597 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	RFC3	P38629	340 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	YNG2	P38806	282 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	FAD1	P38913	306 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	TMN3	P40071	706 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	GCN20	P43535	752 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	RPA34	P47006	233 aa	Predicted RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	ECM27	P47144	725 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	CGR1	P53188	120 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	YNL050C	P53952	270 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	SKO1	Q02100	647 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	YDR179W-A	Q03983	463 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	CSI1	Q04368	295 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	RRP45	Q05636	305 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	THI7	Q05998	598 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	ATG23	Q06671	453 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	TSR1	Q07381	788 aa	Known RBP	4.82	□□□□□ -1.64
ROT1	YMR200W	SIL1	Q08199	421 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	ULA1	Q12059	462 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	YNL162W-A	Q3E7A8	72 aa		4.82	□□□□□ -1.64
ROT1	YMR200W	ILV5	P06168	395 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	CLN1	P20437	546 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	VPS34	P22543	875 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	BOS1	P25385	244 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	SSE2	P32590	693 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	TIF3	P34167	436 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	PXL1	P36166	706 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	ATP3	P38077	311 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	KEL1	P38853	1164 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	BUR6	P40096	142 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	YIL077C	P40508	320 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	IAH1	P41734	238 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	PNC1	P53184	216 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	YGR151C	P53287	111 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	USA1	Q03714	838 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	FIN1	Q03898	291 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	ATC1	Q04005	294 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	RRB1	Q04225	511 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	PDS5	Q04264	1277 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	SEG1	Q04279	960 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	ARR1	Q06596	294 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	ARR3	Q06598	404 aa		4.81	□□□□□ -1.64
ROT1	YMR200W	PRS5	Q12265	496 aa	Known RBP	4.81	□□□□□ -1.64
ROT1	YMR200W	CDC37	P06101	506 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	PDE2	P06776	526 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	MRP13	P12686	339 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	FEN2	P25621	512 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	RFA2	P26754	273 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	EFB1	P32471	206 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	KRE6	P32486	720 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	KKQ8	P36004	724 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	TCD1	P38756	429 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	BZZ1	P38822	633 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	TOM71	P38825	639 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	NET1	P47035	1189 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	URB2	P47108	1174 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	EMC2	P47133	292 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	RFX1	P48743	811 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	YAT1	P80235	687 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	UTP6	Q02354	440 aa	Known RBP	4.8	□□□□□ -1.64
ROT1	YMR200W	YMR130W	Q04223	302 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	CRN1	Q06440	651 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	YFT2	Q06676	274 aa		4.8	□□□□□ -1.64
ROT1	YMR200W	RPN13	O13563	156 aa		4.79	□□□□□ -1.64
ROT1	YMR200W	PRB1	P09232	635 aa		4.79	□□□□□ -1.64
ROT1	YMR200W	SAM1	P10659	382 aa	Known RBP	4.79	□□□□□ -1.64
ROT1	YMR200W	SCH9	P11792	824 aa	Known RBP	4.79	□□□□□ -1.64
ROT1	YMR200W	PDE1	P22434	369 aa		4.79	□□□□□ -1.64
ROT1	YMR200W	ASF2	P32448	525 aa	Predicted RBP	4.79	□□□□□ -1.64
ROT1	YMR200W	YME1	P32795	747 aa		4.79	□□□□□ -1.64
ROT1	YMR200W	UGP1	P32861	499 aa	Known RBP	4.79	□□□□□ -1.64
ROT1	YMR200W	GMH1	P36125	273 aa		4.79	□□□□□ -1.64
ROT1	YMR200W	PIG2	P40187	538 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms