RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	MEI4	P29467	408 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	DBF20	P32328	564 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	DSS4	P32601	143 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	TMT1	P32643	299 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	PTH2	P34222	208 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	GLG1	P36143	616 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	TVP38	P36164	337 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	SWC5	P38326	303 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	TRM5	P38793	499 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	FLC2	P39719	783 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	PDS1	P40316	373 aa	Predicted RBP	4.58	□□□□□ -1.68
EAR1	YMR171C	GCN20	P43535	752 aa	Known RBP	4.58	□□□□□ -1.68
EAR1	YMR171C	ARC1	P46672	376 aa	Known RBP	4.58	□□□□□ -1.68
EAR1	YMR171C	YGR016W	P53209	190 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	YNL146W	P53906	100 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	SLT2	Q00772	484 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	OSH6	Q02201	448 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	YDR476C	Q03362	224 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	ENT2	Q05785	613 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
EAR1	YMR171C	IMA2	Q08295	589 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	PNS1	Q12412	539 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	UBR2	Q07963	1872 aa		4.58	□□□□□ -1.68
EAR1	YMR171C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
EAR1	YMR171C	YAK1	P14680	807 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	EST1	P17214	699 aa	Predicted RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	TRX2	P22803	104 aa	Known RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	RAD14	P28519	371 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	SKG6	P32900	734 aa	Predicted RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	AST1	P35183	429 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	GMH1	P36125	273 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	MMS4	P38257	691 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	YJL107C	P42947	387 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	POL31	P46957	487 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	NUP84	P52891	726 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	HOF1	Q05080	669 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	COQ9	Q05779	260 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	SNX3	Q08826	162 aa	Known RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	YLL056C	Q12177	298 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	HRT3	Q12347	344 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	PHO5	P00635	467 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	TEF1	P02994	458 aa	Known RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	PUT4	P15380	627 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	STE4	P18851	423 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	PUP2	P32379	260 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	MRS6	P32864	603 aa	Known RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	SHP1	P34223	423 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	OCT1	P35999	772 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	RRN3	P36070	627 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	ECM4	P36156	370 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	VID24	P38263	362 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	TSC10	P38342	320 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	VAB2	P40003	282 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	ERR3	P42222	437 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	YIP4	P53093	235 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	GND2	P53319	492 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	IST1	P53843	298 aa	Predicted RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	ASI1	P54074	624 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	TRS31	Q03337	283 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	TRS130	Q03660	1102 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	TMN2	Q04562	672 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	CIA1	Q05583	330 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	YLR455W	Q06188	304 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	SHS1	Q07657	551 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	CIR2	Q08822	631 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	YPR202W	Q08993	238 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	SGT2	Q12118	346 aa	Known RBP	4.57	□□□□□ -1.68
EAR1	YMR171C	IES3	Q12345	250 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	AVL9	Q12500	764 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	PCD1	Q12524	340 aa		4.57	□□□□□ -1.68
EAR1	YMR171C	SEC63	P14906	663 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	SIR1	P21691	654 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	URA10	P30402	227 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	DPH2	P32461	534 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	SPR1	P32603	445 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	PEX5	P35056	612 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	KES1	P35844	434 aa	Known RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	LHS1	P36016	881 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	NOP4	P37838	685 aa	Known RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	YMC2	P38087	329 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	REG2	P38232	338 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	DIA4	P38705	446 aa	Predicted RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	PEP8	P40335	379 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	YIL054W	P40524	105 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	PMT6	P42934	759 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	LAM5	P43560	674 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	COS12	P53053	380 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	YGL108C	P53139	140 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	YGL036W	P53185	909 aa	Predicted RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	SPC98	P53540	846 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	YNL058C	P53947	316 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	TMA20	P89886	181 aa	Predicted RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	TRS23	Q03784	219 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	INP2	Q03824	705 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	TVP15	Q03860	143 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	TAF11	Q04226	346 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	BUD22	Q04347	519 aa	Known RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	CUE5	Q08412	411 aa	Known RBP	4.56	□□□□□ -1.68
EAR1	YMR171C	VIK1	Q12045	647 aa		4.56	□□□□□ -1.68
EAR1	YMR171C	ADF1	Q2V2Q1	113 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms