RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	MSO1	P53604	210 aa	Known RBP	3.21	□□□□□ -1.9
ATG38	YLR211C	YML037C	Q03703	340 aa		3.21	□□□□□ -1.9
ATG38	YLR211C	IOC4	Q04213	475 aa		3.21	□□□□□ -1.9
ATG38	YLR211C	COQ9	Q05779	260 aa		3.21	□□□□□ -1.9
ATG38	YLR211C	HNT3	Q08702	217 aa		3.21	□□□□□ -1.9
ATG38	YLR211C	PUT3	P25502	979 aa	Predicted RBP	3.2	□□□□□ -1.9
ATG38	YLR211C	YIH1	P25637	258 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	CIN4	P39110	191 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	ALG8	P40351	577 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	MKT1	P40850	830 aa	Known RBP	3.2	□□□□□ -1.9
ATG38	YLR211C	NGL3	Q03210	505 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	ADD37	Q03233	198 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	PHO92	Q06390	306 aa		3.2	□□□□□ -1.9
ATG38	YLR211C	HSH49	Q99181	213 aa	Predicted RBP	3.2	□□□□□ -1.9
ATG38	YLR211C	SGS1	P35187	1447 aa		3.19	□□□□□ -1.9
ATG38	YLR211C	CHS3	P29465	1165 aa		3.19	□□□□□ -1.9
ATG38	YLR211C	LYS14	P40971	790 aa		3.19	□□□□□ -1.9
ATG38	YLR211C	VMS1	Q04311	632 aa	Known RBP	3.19	□□□□□ -1.9
ATG38	YLR211C	BUD22	Q04347	519 aa	Known RBP	3.19	□□□□□ -1.9
ATG38	YLR211C	IVY1	Q04934	453 aa		3.19	□□□□□ -1.9
ATG38	YLR211C	PRE8	P23639	250 aa		3.18	□□□□□ -1.9
ATG38	YLR211C	FUN19	P28003	413 aa	Predicted RBP	3.18	□□□□□ -1.9
ATG38	YLR211C	UTR4	P32626	227 aa		3.18	□□□□□ -1.9
ATG38	YLR211C	TIF4631	P39935	952 aa	Known RBP	3.18	□□□□□ -1.9
ATG38	YLR211C	AIM22	P47051	409 aa		3.18	□□□□□ -1.9
ATG38	YLR211C	RBG2	P53295	368 aa	Known RBP	3.18	□□□□□ -1.9
ATG38	YLR211C	ART10	P18634	518 aa	Known RBP	3.17	□□□□□ -1.9
ATG38	YLR211C	MSN2	P33748	704 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	DUG2	P38149	878 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	TCM62	P38228	572 aa	Known RBP	3.17	□□□□□ -1.9
ATG38	YLR211C	YGL242C	P53066	181 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	ARK1	P53974	638 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	IRC15	Q02733	499 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	FMP40	Q08968	688 aa	Predicted RBP	3.17	□□□□□ -1.9
ATG38	YLR211C	RKM5	Q12367	367 aa		3.17	□□□□□ -1.9
ATG38	YLR211C	CDC16	P09798	840 aa		3.16	□□□□□ -1.9
ATG38	YLR211C	TRX2	P22803	104 aa	Known RBP	3.16	□□□□□ -1.9
ATG38	YLR211C	MUD2	P36084	527 aa	Known RBP	3.16	□□□□□ -1.9
ATG38	YLR211C	YBP1	P38315	674 aa		3.16	□□□□□ -1.9
ATG38	YLR211C	FAA2	P39518	744 aa		3.16	□□□□□ -1.9
ATG38	YLR211C	GWT1	P47026	490 aa		3.16	□□□□□ -1.9
ATG38	YLR211C	DUO1	P53168	247 aa	Known RBP	3.16	□□□□□ -1.9
ATG38	YLR211C	YOR387C	Q08910	206 aa		3.16	□□□□□ -1.9
ATG38	YLR211C	LSP1	Q12230	341 aa	Known RBP	3.16	□□□□□ -1.9
ATG38	YLR211C	CHS1	P08004	1131 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	YIM1	P28625	365 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	SHP1	P34223	423 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	KEL1	P38853	1164 aa	Known RBP	3.15	□□□□□ -1.91
ATG38	YLR211C	PRE5	P40302	234 aa	Known RBP	3.15	□□□□□ -1.91
ATG38	YLR211C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
ATG38	YLR211C	IPI3	P53877	555 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	VPS74	Q06385	345 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	THP1	Q08231	455 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	KEL3	Q08979	651 aa	Predicted RBP	3.15	□□□□□ -1.91
ATG38	YLR211C	CFT2	Q12102	859 aa	Predicted RBP	3.15	□□□□□ -1.91
ATG38	YLR211C	YBR126W-A	Q8TGU7	68 aa		3.15	□□□□□ -1.91
ATG38	YLR211C	EST1	P17214	699 aa	Predicted RBP	3.14	□□□□□ -1.91
ATG38	YLR211C	SUI2	P20459	304 aa	Known RBP	3.14	□□□□□ -1.91
ATG38	YLR211C	NAM9	P27929	486 aa		3.14	□□□□□ -1.91
ATG38	YLR211C	GCD10	P41814	478 aa		3.14	□□□□□ -1.91
ATG38	YLR211C	TOF2	Q02208	771 aa		3.14	□□□□□ -1.91
ATG38	YLR211C	RBS1	Q05672	457 aa	Known RBP	3.14	□□□□□ -1.91
ATG38	YLR211C	YPT6	Q99260	215 aa		3.14	□□□□□ -1.91
ATG38	YLR211C	MCM10	P32354	571 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	BNA4	P38169	460 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	YBL029W	P38201	376 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	AFG3	P39925	761 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	FAU1	P40099	211 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	IMD4	P50094	524 aa	Known RBP	3.13	□□□□□ -1.91
ATG38	YLR211C	GPI1	P53306	609 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	HEF3	P53978	1044 aa	Known RBP	3.13	□□□□□ -1.91
ATG38	YLR211C	YEH1	Q07804	573 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	BSC6	Q08280	497 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	TMS1	Q12116	473 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	NMD4	Q12129	218 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	ERV2	Q12284	196 aa		3.13	□□□□□ -1.91
ATG38	YLR211C	LPD1	P09624	499 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	CPR1	P14832	162 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	GLK1	P17709	500 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	YEL045C	P32616	141 aa		3.12	□□□□□ -1.91
ATG38	YLR211C	YIL067C	P40514	678 aa		3.12	□□□□□ -1.91
ATG38	YLR211C	RRT5	P43607	289 aa		3.12	□□□□□ -1.91
ATG38	YLR211C	ALK1	P43633	760 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	ZPR1	P53303	486 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	OPY2	Q06810	360 aa		3.12	□□□□□ -1.91
ATG38	YLR211C	NOP58	Q12499	511 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	RRP12	Q12754	1228 aa	Known RBP	3.12	□□□□□ -1.91
ATG38	YLR211C	MES1	P00958	751 aa	Known RBP	3.11	□□□□□ -1.91
ATG38	YLR211C	HIP1	P06775	603 aa		3.11	□□□□□ -1.91
ATG38	YLR211C	SPT15	P13393	240 aa	Known RBP	3.11	□□□□□ -1.91
ATG38	YLR211C	PRP2	P20095	876 aa	Predicted RBP	3.11	□□□□□ -1.91
ATG38	YLR211C	TCD2	P36101	447 aa	Known RBP	3.11	□□□□□ -1.91
ATG38	YLR211C	MSR1	P38714	643 aa		3.11	□□□□□ -1.91
ATG38	YLR211C	ART5	P53244	586 aa	Known RBP	3.11	□□□□□ -1.91
ATG38	YLR211C	PIR3	Q03180	325 aa		3.11	□□□□□ -1.91
ATG38	YLR211C	RLM1	Q12224	676 aa		3.11	□□□□□ -1.91
ATG38	YLR211C	EXO70	P19658	623 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	BUB3	P26449	341 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	ATP11	P32453	318 aa		3.1	□□□□□ -1.91
ATG38	YLR211C	MRP4	P32902	394 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms