RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	CUL3	P53202	744 aa		4.59	□□□□□ -1.67
NSE3	YDR288W	RHO4	Q00246	291 aa		4.59	□□□□□ -1.67
NSE3	YDR288W	NUP53	Q03790	475 aa		4.59	□□□□□ -1.67
NSE3	YDR288W	MRD1	Q06106	887 aa	Known RBP	4.59	□□□□□ -1.67
NSE3	YDR288W	RRG1	Q12167	365 aa	Predicted RBP	4.59	□□□□□ -1.67
NSE3	YDR288W	SFI1	Q12369	946 aa		4.59	□□□□□ -1.67
NSE3	YDR288W	SEC62	P21825	274 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	ACH1	P32316	526 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	BNA4	P38169	460 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	YIR014W	P40570	242 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	ALT2	P52892	507 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	YEH2	Q07950	538 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	SCM3	Q12334	223 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	PDH1	Q12428	516 aa	Known RBP	4.58	□□□□□ -1.68
NSE3	YDR288W	RTN2	Q12443	393 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	YDL007C-A	Q2V2Q0	85 aa		4.58	□□□□□ -1.68
NSE3	YDR288W	BRR1	Q99177	341 aa	Predicted RBP	4.58	□□□□□ -1.68
NSE3	YDR288W	PEP4	P07267	405 aa	Known RBP	4.57	□□□□□ -1.68
NSE3	YDR288W	ERG1	P32476	496 aa	Known RBP	4.57	□□□□□ -1.68
NSE3	YDR288W	MFT1	P33441	392 aa	Known RBP	4.57	□□□□□ -1.68
NSE3	YDR288W	EFM2	P38347	419 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	SMF1	P38925	575 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	YJL068C	P40363	299 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	HXT14	P42833	540 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	ZPR1	P53303	486 aa	Known RBP	4.57	□□□□□ -1.68
NSE3	YDR288W	JJJ1	P53863	590 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	SAM50	P53969	484 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	GRS2	Q06817	618 aa		4.57	□□□□□ -1.68
NSE3	YDR288W	NCE102	Q12207	173 aa	RIP-Chip data	4.57	□□□□□ -1.68	not detected
NSE3	YDR288W	RAV1	P47104	1357 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	COR1	P07256	457 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	RPL31B	P0C2H9	113 aa	Known RBP	4.56	□□□□□ -1.68
NSE3	YDR288W	BAR1	P12630	587 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	GLN3	P18494	730 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	PRP2	P20095	876 aa	Predicted RBP	4.56	□□□□□ -1.68
NSE3	YDR288W	RPS2	P25443	254 aa	Known RBP	4.56	□□□□□ -1.68
NSE3	YDR288W	SPC34	P36131	295 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	VTC2	P43585	828 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	YJR154W	P47181	346 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	GRX6	Q12438	231 aa		4.56	□□□□□ -1.68
NSE3	YDR288W	RAD52	P06778	471 aa	Known RBP	4.55	□□□□□ -1.68
NSE3	YDR288W	CLB3	P24870	427 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	ELO2	P25358	347 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	TCM62	P38228	572 aa	Known RBP	4.55	□□□□□ -1.68
NSE3	YDR288W	MBB1	P39534	108 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	YTA12	P40341	825 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	GPD2	P41911	440 aa	Known RBP	4.55	□□□□□ -1.68
NSE3	YDR288W	AIM22	P47051	409 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	HEF3	P53978	1044 aa	Known RBP	4.55	□□□□□ -1.68
NSE3	YDR288W	YMR155W	Q03795	547 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	RQC1	Q05468	723 aa	Known RBP	4.55	□□□□□ -1.68
NSE3	YDR288W	YOR365C	Q08844	703 aa		4.55	□□□□□ -1.68
NSE3	YDR288W	APE1	P14904	514 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	ERG3	P32353	365 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	ECM15	P35195	104 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	BYE1	P36106	594 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	RIM2	P38127	377 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	TIF4631	P39935	952 aa	Known RBP	4.54	□□□□□ -1.68
NSE3	YDR288W	POP1	P41812	875 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	IVY1	Q04934	453 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	THI20	Q08224	551 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	NRT1	Q08485	598 aa		4.54	□□□□□ -1.68
NSE3	YDR288W	CAR1	P00812	333 aa	Known RBP	4.53	□□□□□ -1.68
NSE3	YDR288W	RPL3	P14126	387 aa	Known RBP	4.53	□□□□□ -1.68
NSE3	YDR288W	NPL6	P32832	435 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	MPE1	P35728	441 aa	Known RBP	4.53	□□□□□ -1.68
NSE3	YDR288W	DUG2	P38149	878 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	YER130C	P39959	443 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	YND1	P40009	630 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	CSM2	P40465	213 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	DIM1	P41819	318 aa	Known RBP	4.53	□□□□□ -1.68
NSE3	YDR288W	MNP1	P53163	194 aa	Predicted RBP	4.53	□□□□□ -1.68
NSE3	YDR288W	RBA50	Q04418	439 aa		4.53	□□□□□ -1.68
NSE3	YDR288W	REC107	P21651	314 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	MSN2	P33748	704 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	SEC66	P33754	206 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	CBP4	P37267	147 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	OSH3	P38713	996 aa	Known RBP	4.52	□□□□□ -1.69
NSE3	YDR288W	GUF1	P46943	645 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	IKS1	P47042	667 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	VTA1	Q06263	330 aa		4.52	□□□□□ -1.69
NSE3	YDR288W	EXO70	P19658	623 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	RAD14	P28519	371 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	AFG1	P32317	509 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	SAS3	P34218	831 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	RIP-Chip
NSE3	YDR288W	OCA1	P50946	238 aa	Predicted RBP	4.51	□□□□□ -1.69
NSE3	YDR288W	DRN1	P53255	507 aa	Known RBP	4.51	□□□□□ -1.69
NSE3	YDR288W	GPI1	P53306	609 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	PHO92	Q06390	306 aa		4.51	□□□□□ -1.69
NSE3	YDR288W	SGV1	P23293	657 aa	Known RBP	4.5	□□□□□ -1.69
NSE3	YDR288W	IDH2	P28241	369 aa	Known RBP	4.5	□□□□□ -1.69
NSE3	YDR288W	UTR4	P32626	227 aa		4.5	□□□□□ -1.69
NSE3	YDR288W	SSU1	P41930	458 aa		4.5	□□□□□ -1.69
NSE3	YDR288W	YGR149W	P48236	432 aa		4.5	□□□□□ -1.69
NSE3	YDR288W	SLD5	Q03406	294 aa		4.5	□□□□□ -1.69
NSE3	YDR288W	LSP1	Q12230	341 aa	Known RBP	4.5	□□□□□ -1.69
NSE3	YDR288W	MES1	P00958	751 aa	Known RBP	4.49	□□□□□ -1.69
NSE3	YDR288W	RHO2	P06781	192 aa		4.49	□□□□□ -1.69
NSE3	YDR288W	PPH22	P23595	377 aa		4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms